View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3215-Insertion-5 (Length: 413)
Name: NF3215-Insertion-5
Description: NF3215
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3215-Insertion-5 |
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Alignment Details
Target: chr4 (Bit Score: 98; Significance: 4e-48; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 8 - 117
Target Start/End: Complemental strand, 9936504 - 9936395
Alignment:
| Q |
8 |
aatatttctatttcttccgacaatatgcacaacaaccgaaaggaacaaacacaaagataaagaagacttaactacctttgctctcctacctactaatcat |
107 |
Q |
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| T |
9936504 |
aatatttctatttcttccgacaatatgcacaacaaccgaaaggaacaaacacaaagataaagaaggcttaactacctttgctctcctacctactaatcat |
9936405 |
T |
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| Q |
108 |
actgtgttgc |
117 |
Q |
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| T |
9936404 |
agtatgttgc |
9936395 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 94; E-Value: 9e-46
Query Start/End: Original strand, 151 - 269
Target Start/End: Complemental strand, 9936374 - 9936256
Alignment:
| Q |
151 |
attcacaacatttacatcttgcaagaaatttagagaatcagacaagcagcatatagnnnnnnnctttgtttcgattaatcaaatcacaagcatatagaga |
250 |
Q |
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| T |
9936374 |
attcacaacatttacatcttgcaagaaatttagagaatcagacaagcagtatatagtgtttttctttgtttcgattaatcaaatcacaagcatatagaga |
9936275 |
T |
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| Q |
251 |
ttcaaggagttagtaaggg |
269 |
Q |
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| T |
9936274 |
ttcaaggagttagtaaggg |
9936256 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 334 - 413
Target Start/End: Complemental strand, 9936161 - 9936082
Alignment:
| Q |
334 |
ttttccaaataatctgaagacaaatgtgtttggattacaagaacatgcatttgtgttcatgctgattagaaattaatctt |
413 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||| |||| |||| |
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| T |
9936161 |
ttttccaaataatctgaagacaaatgtgtttggattacaagaacatgcatttgtgttcgtactgattagacattattctt |
9936082 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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