View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3215-Insertion-6 (Length: 379)

Name: NF3215-Insertion-6
Description: NF3215
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3215-Insertion-6
NF3215-Insertion-6
[»] chr7 (13 HSPs)
chr7 (8-173)||(8655264-8655429)
chr7 (222-378)||(8655052-8655208)
chr7 (8-166)||(13332172-13332334)
chr7 (23-135)||(8668418-8668530)
chr7 (8-166)||(10493023-10493185)
chr7 (8-122)||(3148337-3148451)
chr7 (23-140)||(8660192-8660309)
chr7 (8-140)||(1302259-1302391)
chr7 (8-129)||(8647660-8647781)
chr7 (7-66)||(7876855-7876914)
chr7 (8-71)||(29577011-29577074)
chr7 (8-66)||(8591420-8591478)
chr7 (8-48)||(29581187-29581227)
[»] chr1 (3 HSPs)
chr1 (7-139)||(4677561-4677693)
chr1 (23-120)||(34465285-34465382)
chr1 (8-127)||(15596021-15596139)
[»] chr4 (3 HSPs)
chr4 (18-149)||(9323096-9323227)
chr4 (18-149)||(9377575-9377706)
chr4 (18-150)||(9335068-9335199)
[»] chr2 (5 HSPs)
chr2 (8-129)||(12235758-12235878)
chr2 (8-120)||(7543245-7543357)
chr2 (8-119)||(14705432-14705543)
chr2 (11-122)||(12244428-12244539)
chr2 (17-63)||(16656631-16656677)
[»] chr6 (1 HSPs)
chr6 (39-131)||(28911271-28911363)
[»] chr5 (2 HSPs)
chr5 (8-135)||(28220900-28221027)
chr5 (8-127)||(42554209-42554328)


Alignment Details
Target: chr7 (Bit Score: 166; Significance: 9e-89; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 166; E-Value: 9e-89
Query Start/End: Original strand, 8 - 173
Target Start/End: Complemental strand, 8655429 - 8655264
Alignment:
Q  8 caaggcaatagaactacaccttctgttgttgctttcactgattatcaaaggttgattggcaatggagctgagaatcaatctgctaccaaccccgaaaaca 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8655429 caaggcaatagaactacaccttctgttgttgctttcactgattatcaaaggttgattggcaatggagctgagaatcaatctgctaccaaccccgaaaaca 8655330  T
Q  108 ctgtatttggtaaatttctatttttattctctattacttcatgcatttagggtttgtttgttatct 173  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8655329 ctgtatttggtaaatttctatttttattctctattacttcatgcatttagggtttgtttgttatct 8655264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 222 - 378
Target Start/End: Complemental strand, 8655208 - 8655052
Alignment:
Q  222 atcataatgaaaatcactagatgctactcaaatgtagttgtgtcacaatcaatcattggctgatgcgattactataatcctgtgattgtgaaccaaaatt 321  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8655208 atcataatgaaaatcactagatgctactcaaatgtagttgtgtcacaatcaatcattggctgatgcgattactataatcctgtgattgtgaaccaaaatt 8655109  T
Q  322 taaaacttgatttgcacaaataaatgatgagaatttactattaatatctttattatt 378  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8655108 taaaacttgatttgcacaaataaatgatgagaatttactattaatatctttattatt 8655052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 8 - 166
Target Start/End: Original strand, 13332172 - 13332334
Alignment:
Q  8 caaggcaatagaactacaccttctgttgttgctttcactgattatcaaaggttgattggcaatggagctgagaatcaatctgctaccaaccccgaaaaca 107  Q
    ||||| |||||||||||||||||| ||||||||||||   || ||||||| ||||||||  |||  ||  ||||||||||||| || ||||| |||||||    
T  13332172 caaggaaatagaactacaccttcttttgttgctttcaacaatgatcaaagattgattggtgatgctgccaagaatcaatctgccactaaccctgaaaaca 13332271  T
Q  108 ctgtatttg----gtaaatttctatttttattctctattacttcatgcatttagggtttgttt 166  Q
    || | ||||    |||||||||| ||| |||||| | |||||||||| |||||||||||||||    
T  13332272 ctatctttggtacgtaaatttctgtttctattctttgttacttcatgtatttagggtttgttt 13332334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 23 - 135
Target Start/End: Complemental strand, 8668530 - 8668418
Alignment:
Q  23 acaccttctgttgttgctttcactgattatcaaaggttgattggcaatggagctgagaatcaatctgctaccaaccccgaaaacactgtatttggtaaat 122  Q
    ||||||||| ||||||||||||   || | ||||||||||||||| |||  ||| |||||||||||||||| ||||| ||||||||| | ||||||||||    
T  8668530 acaccttcttttgttgctttcaacaatgaacaaaggttgattggcgatgctgctaagaatcaatctgctactaaccctgaaaacactatctttggtaaat 8668431  T
Q  123 ttctatttttatt 135  Q
    |||||||| ||||    
T  8668430 ttctatttctatt 8668418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 8 - 166
Target Start/End: Original strand, 10493023 - 10493185
Alignment:
Q  8 caaggcaatagaactacaccttctgttgttgctttcactgattatcaaaggttgattggcaatggagctgagaatcaatctgctaccaaccccgaaaaca 107  Q
    ||||| |||||||||||||||||| ||||||||||||   || ||||||||||||| ||  |||  ||| ||||||||||||| || ||||| |||||||    
T  10493023 caaggaaatagaactacaccttcttttgttgctttcaacaatgatcaaaggttgatcggtgatgctgctaagaatcaatctgccactaaccctgaaaaca 10493122  T
Q  108 ctgtatttggtaa----atttctatttttattctctattacttcatgcatttagggtttgttt 166  Q
    | || |||||||     |||| | ||| |||||| | |||||||||| |||||||||||||||    
T  10493123 ccgtctttggtacgtagatttgtgtttctattctttgttacttcatgtatttagggtttgttt 10493185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 8 - 122
Target Start/End: Complemental strand, 3148451 - 3148337
Alignment:
Q  8 caaggcaatagaactacaccttctgttgttgctttcactgattatcaaaggttgattggcaatggagctgagaatcaatctgctaccaaccccgaaaaca 107  Q
    |||||||| | ||| ||||||||| ||||||||||||||||| ||||||||||| ||||  |||  ||| |||||||| || | || ||||| |||||||    
T  3148451 caaggcaacaaaaccacaccttcttttgttgctttcactgatgatcaaaggttggttggtgatgctgctaagaatcaagctcccacaaaccctgaaaaca 3148352  T
Q  108 ctgtatttggtaaat 122  Q
    |||| ||||||||||    
T  3148351 ctgtttttggtaaat 3148337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 23 - 140
Target Start/End: Complemental strand, 8660309 - 8660192
Alignment:
Q  23 acaccttctgttgttgctttcactgattatcaaaggttgattggcaatggagctgagaatcaatctgctaccaaccccgaaaacactgtatttggtaaat 122  Q
    ||||||||  ||||||||||||||||  ||||||||||||||||  |||  ||| |||||||  |||| ||||| || | ||||||||| |||||| |||    
T  8660309 acaccttcatttgttgctttcactgacgatcaaaggttgattggtgatgctgctaagaatcaggctgcaaccaatcctgtaaacactgtttttggttaat 8660210  T
Q  123 ttctatttttattctcta 140  Q
    |||||||| |||||||||    
T  8660209 ttctatttgtattctcta 8660192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 8 - 140
Target Start/End: Complemental strand, 1302391 - 1302259
Alignment:
Q  8 caaggcaatagaactacaccttctgttgttgctttcactgattatcaaaggttgattggcaatggagctgagaatcaatctgctaccaaccccgaaaaca 107  Q
    |||||||| | ||| ||||| ||| ||||||||||||| ||| ||||||||||||| ||  |||  ||| |||||||  |||| ||||| || ||||| |    
T  1302391 caaggcaacaaaacaacaccgtcttttgttgctttcaccgatgatcaaaggttgatcggtgatgctgctaagaatcaggctgcaaccaatcctgaaaata 1302292  T
Q  108 ctgtatttggtaaatttctatttttattctcta 140  Q
    |||| |||||||||||||| ||| |||||||||    
T  1302291 ctgtttttggtaaatttctctttgtattctcta 1302259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 8 - 129
Target Start/End: Complemental strand, 8647781 - 8647660
Alignment:
Q  8 caaggcaatagaactacaccttctgttgttgctttcactgattatcaaaggttgattggcaatggagctgagaatcaatctgctaccaaccccgaaaaca 107  Q
    ||||| || ||||||||||||||| ||||||||||||| ||| ||||||||||||||||  |||  ||| | |||||  ||||| | |||||    ||||    
T  8647781 caaggaaacagaactacaccttcttttgttgctttcaccgatgatcaaaggttgattggtgatgccgctaaaaatcaggctgcttctaaccctaccaaca 8647682  T
Q  108 ctgtatttggtaaatttctatt 129  Q
    |||| |||||||||||||||||    
T  8647681 ctgtctttggtaaatttctatt 8647660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 7 - 66
Target Start/End: Original strand, 7876855 - 7876914
Alignment:
Q  7 acaaggcaatagaactacaccttctgttgttgctttcactgattatcaaaggttgattgg 66  Q
    ||||||||| ||||| ||||||||| |||||||||||||  || ||||||||||||||||    
T  7876855 acaaggcaacagaacaacaccttcttttgttgctttcacgaatgatcaaaggttgattgg 7876914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 8 - 71
Target Start/End: Original strand, 29577011 - 29577074
Alignment:
Q  8 caaggcaatagaactacaccttctgttgttgctttcactgattatcaaaggttgattggcaatg 71  Q
    |||||||||||||| |||||||||||||| |||||||||||||  | |||||| ||||| ||||    
T  29577011 caaggcaatagaaccacaccttctgttgtagctttcactgattcactaaggttaattggtaatg 29577074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 8 - 66
Target Start/End: Complemental strand, 8591478 - 8591420
Alignment:
Q  8 caaggcaatagaactacaccttctgttgttgctttcactgattatcaaaggttgattgg 66  Q
    ||||| ||||||| |||||||||| |||||||||| ||| || ||||||||||||||||    
T  8591478 caaggaaatagaattacaccttcttttgttgcttttactaatgatcaaaggttgattgg 8591420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 8 - 48
Target Start/End: Original strand, 29581187 - 29581227
Alignment:
Q  8 caaggcaatagaactacaccttctgttgttgctttcactga 48  Q
    ||||||||| |||| |||||||||||||| |||||||||||    
T  29581187 caaggcaatggaaccacaccttctgttgtagctttcactga 29581227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 73; Significance: 3e-33; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 7 - 139
Target Start/End: Original strand, 4677561 - 4677693
Alignment:
Q  7 acaaggcaatagaactacaccttctgttgttgctttcactgattatcaaaggttgattggcaatggagctgagaatcaatctgctaccaaccccgaaaac 106  Q
    ||||||||| | ||| ||||||||| |||||||||| |||||| |||||||||||||||| ||||  ||| ||||||||||||| |||||| | ||||||    
T  4677561 acaaggcaacaaaacaacaccttcttttgttgcttttactgatgatcaaaggttgattggtaatgctgctaagaatcaatctgccaccaactctgaaaac 4677660  T
Q  107 actgtatttggtaaatttctatttttattctct 139  Q
    ||||| |||||||||||||||||| ||||||||    
T  4677661 actgtctttggtaaatttctatttctattctct 4677693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 23 - 120
Target Start/End: Original strand, 34465285 - 34465382
Alignment:
Q  23 acaccttctgttgttgctttcactgattatcaaaggttgattggcaatggagctgagaatcaatctgctaccaaccccgaaaacactgtatttggtaa 120  Q
    ||||||||| |||||||||| ||| || ||||||| ||||| || ||||  ||| |||||||| |||||||||||||  | |||||||| ||||||||    
T  34465285 acaccttcttttgttgcttttactcatgatcaaagattgatcggtaatgctgctaagaatcaaactgctaccaacccacagaacactgtttttggtaa 34465382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 8 - 127
Target Start/End: Complemental strand, 15596139 - 15596021
Alignment:
Q  8 caaggcaatagaactacaccttctgttgttgctttcactgattatcaaaggttgattggcaatggagctgagaatcaatctgctaccaaccccgaaaaca 107  Q
    ||||| || |||| |||||||||| ||||| |||||||| || ||||||||||||||||  |||  ||| ||| |||| ||||  || ||||| ||||||    
T  15596139 caaggaaacagaattacaccttcttttgtttctttcactaatgatcaaaggttgattggtgatgctgctaagagtcaagctgcctccgaccccaaaaaca 15596040  T
Q  108 ctgtatttggtaaatttcta 127  Q
    | || |||||||||||||||    
T  15596039 c-gtctttggtaaatttcta 15596021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 52; Significance: 1e-20; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 18 - 149
Target Start/End: Original strand, 9323096 - 9323227
Alignment:
Q  18 gaactacaccttctgttgttgctttcactgattatcaaaggttgattggcaatggagctgagaatcaatctgctaccaaccccgaaaacactgtatttgg 117  Q
    |||| ||||||||| ||||||||||||   || | ||||||||||||||  |||  ||| |||||||||||||||| ||||| ||||||||| | |||||    
T  9323096 gaacaacaccttcttttgttgctttcaacaatgagcaaaggttgattggtgatgctgctaagaatcaatctgctactaaccctgaaaacactatctttgg 9323195  T
Q  118 taaatttctatttttattctctattacttcat 149  Q
    ||||||||||||| |||| |||| | ||||||    
T  9323196 taaatttctatttctattatctactgcttcat 9323227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 18 - 149
Target Start/End: Original strand, 9377575 - 9377706
Alignment:
Q  18 gaactacaccttctgttgttgctttcactgattatcaaaggttgattggcaatggagctgagaatcaatctgctaccaaccccgaaaacactgtatttgg 117  Q
    |||| ||||||||| ||||||||||||   || | ||||||||||||||  |||  ||| |||||||||||||||| ||||| ||||||||| | |||||    
T  9377575 gaacaacaccttcttttgttgctttcaacaatgagcaaaggttgattggtgatgctgctaagaatcaatctgctactaaccctgaaaacactatctttgg 9377674  T
Q  118 taaatttctatttttattctctattacttcat 149  Q
    ||||||||||||| |||| |||| | ||||||    
T  9377675 taaatttctatttctattatctactgcttcat 9377706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 18 - 150
Target Start/End: Original strand, 9335068 - 9335199
Alignment:
Q  18 gaactacaccttctgttgttgctttcactgattatcaaaggttgattggcaatggagctgagaatcaatctgctaccaaccccgaaaacactgtatttgg 117  Q
    |||| ||||||||| ||||||||||||   || | ||||||||||| ||  |||  ||| |||||||||||||||| ||||| ||||||||| | |||||    
T  9335068 gaacaacaccttcttttgttgctttcaacaatgagcaaaggttgat-ggtgatgctgctaagaatcaatctgctactaaccctgaaaacactatctttgg 9335166  T
Q  118 taaatttctatttttattctctattacttcatg 150  Q
    ||||||||||||| |||| |||| | |||||||    
T  9335167 taaatttctatttctattatctactgcttcatg 9335199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 8 - 129
Target Start/End: Complemental strand, 12235878 - 12235758
Alignment:
Q  8 caaggcaatagaactacaccttctgttgttgctttcactgattatcaaaggttgattggcaatggagctgagaatcaatctgctaccaaccccgaaaaca 107  Q
    |||||||||||||| || |||||| ||||||||||||| ||  |||| |||||||||||  |||  ||| |||||||| ||||| |||||||  ||||||    
T  12235878 caaggcaatagaacaaccccttcttttgttgctttcaccgaaaatcagaggttgattggtgatgctgctaagaatcaagctgcttccaacccgcaaaaca 12235779  T
Q  108 ctgtatttggtaaatttctatt 129  Q
    | || |||||| ||||||||||    
T  12235778 ccgtctttggt-aatttctatt 12235758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 8 - 120
Target Start/End: Complemental strand, 7543357 - 7543245
Alignment:
Q  8 caaggcaatagaactacaccttctgttgttgctttcactgattatcaaaggttgattggcaatggagctgagaatcaatctgctaccaaccccgaaaaca 107  Q
    |||||||| ||||| ||||||||| ||||||||||||| ||  |||| |||||||| ||  ||   ||| |||||||| ||||| |||||||  ||||||    
T  7543357 caaggcaacagaacaacaccttcttttgttgctttcaccgaaaatcagaggttgatcggtgataatgctaagaatcaagctgcttccaaccctcaaaaca 7543258  T
Q  108 ctgtatttggtaa 120  Q
    |||| ||||||||    
T  7543257 ctgtctttggtaa 7543245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 8 - 119
Target Start/End: Complemental strand, 14705543 - 14705432
Alignment:
Q  8 caaggcaatagaactacaccttctgttgttgctttcactgattatcaaaggttgattggcaatggagctgagaatcaatctgctaccaaccccgaaaaca 107  Q
    |||||||||||||| || |||||| ||||||||||||| ||  ||||  ||||||||||  |||  ||| |||||||| ||||| |||||||   |||||    
T  14705543 caaggcaatagaacaactccttcttttgttgctttcaccgaaaatcagcggttgattggtgatgctgctaagaatcaagctgctgccaaccctcgaaaca 14705444  T
Q  108 ctgtatttggta 119  Q
    |||| |||||||    
T  14705443 ctgtctttggta 14705432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 11 - 122
Target Start/End: Original strand, 12244428 - 12244539
Alignment:
Q  11 ggcaatagaactacaccttctgttgttgctttcactgattatcaaaggttgattggcaatggagctgagaatcaatctgctaccaaccccgaaaacactg 110  Q
    ||||| ||||| |||||||||  |||||||||||||||  |||||||||| |||||  |||  ||| | |||||| ||||| | ||| |  |||||||||    
T  12244428 ggcaacagaacaacaccttcttgtgttgctttcactgaagatcaaaggtttattggtgatgctgctaaaaatcaagctgctgctaactctcaaaacactg 12244527  T
Q  111 tatttggtaaat 122  Q
    | ||||||||||    
T  12244528 tctttggtaaat 12244539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 17 - 63
Target Start/End: Original strand, 16656631 - 16656677
Alignment:
Q  17 agaactacaccttctgttgttgctttcactgattatcaaaggttgat 63  Q
    ||||| ||||||||| |||||||||||||| || |||||||||||||    
T  16656631 agaacaacaccttcttttgttgctttcactcatgatcaaaggttgat 16656677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 39 - 131
Target Start/End: Complemental strand, 28911363 - 28911271
Alignment:
Q  39 ctttcactgattatcaaaggttgattggcaatggagctgagaatcaatctgctaccaaccccgaaaacactgtatttggtaaatttctatttt 131  Q
    ||||||| ||| ||||||||||||||||  |||  ||| |||||||  |||| |||||||||||||||||||| || |||| |||||||||||    
T  28911363 ctttcaccgatgatcaaaggttgattggtgatgctgctaagaatcaggctgccaccaaccccgaaaacactgttttaggtatatttctatttt 28911271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 8 - 135
Target Start/End: Complemental strand, 28221027 - 28220900
Alignment:
Q  8 caaggcaatagaactacaccttctgttgttgctttcactgattatcaaaggttgattggcaatggagctgagaatcaatctgctaccaaccccgaaaaca 107  Q
    |||||||| | ||| || |||||| ||||||||||||| ||| || |||||||||||||| |||  ||| | |||||| | || | ||||||| |||| |    
T  28221027 caaggcaacaaaacaactccttcttttgttgctttcaccgatgatgaaaggttgattggcgatgctgctaaaaatcaaacggccaacaacccccaaaata 28220928  T
Q  108 ctgtatttggtaaatttctatttttatt 135  Q
    | || ||||||||||||||||| |||||    
T  28220927 ccgtctttggtaaatttctattattatt 28220900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 8 - 127
Target Start/End: Original strand, 42554209 - 42554328
Alignment:
Q  8 caaggcaatagaactacaccttctgttgttgctttcactgattatcaaaggttgattggcaatggagctgagaatcaatctgctaccaaccccgaaaaca 107  Q
    |||||||| | ||| ||||||||| |||||||||| ||| || || |||||||||||||  |||  ||| || ||||| | || ||||||||| ||||||    
T  42554209 caaggcaacaaaacaacaccttcttttgttgcttttactcatcatgaaaggttgattggtgatgctgctaaggatcaaaccgccaccaacccccaaaaca 42554308  T
Q  108 ctgtatttggtaaatttcta 127  Q
    |||| ||||||| |||||||    
T  42554309 ctgtctttggtacatttcta 42554328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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