View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3215R-Insertion-1 (Length: 1015)
Name: NF3215R-Insertion-1
Description: NF3215R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3215R-Insertion-1 |
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Alignment Details
Target: chr1 (Bit Score: 561; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 561; E-Value: 0
Query Start/End: Original strand, 372 - 1013
Target Start/End: Complemental strand, 11617405 - 11616763
Alignment:
| Q |
372 |
cgattttgtaacagatgattgaatggataggaaatatattaaacctatactattttactcatacctagctatattatcaactgcaaaatatagttacatt |
471 |
Q |
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| T |
11617405 |
cgattttgtaacaaatgattgaatggataggaaatatattaaacctatactattttactcatacctagctatattatcaactgcaaaatatagttacatt |
11617306 |
T |
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| Q |
472 |
aagttatgttgtttttgaaacaaatgttgaatggataagaaatttatggaatcttaaataaaatcttaccttctccccttctgtgggaaaacaacacaat |
571 |
Q |
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| T |
11617305 |
aagttatgttgtttttgaaacaaatgttgaatggataagaaatttatggaatcttaaataaaatcttaccttctccccttctgtgggaaaacaacacaat |
11617206 |
T |
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| Q |
572 |
ctaccatatgatgtaaggaaggtacatcgatcgctctcaaaatccttacatctcctggatgaagacatggattcttggctacaactaccttccccttaac |
671 |
Q |
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| T |
11617205 |
ctaccatatgatgtaaggagggtacatcgatcgctctcaaaatccttacatctcctggatgaagacatggattcttggctacaactaccttccccttaac |
11617106 |
T |
|
| Q |
672 |
aatatattttccnnnnnnngctccaatgcccttagaagaaattgaggacataacannnnnnncttggaagagatatctgcacaaatacctcaccatattt |
771 |
Q |
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| T |
11617105 |
aatatattttcctttttttgctccaatgtccttagaagaaattgaggacataaca-ttttttcttggaagagatatctgcacaaatacctcaccatattt |
11617007 |
T |
|
| Q |
772 |
taatgtccttgtttcgtccaagcatcctaacattgatcttcctttccgaacaaaaatcctagttttgagctgcaactcttgtaactttgttgcacatatt |
871 |
Q |
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| T |
11617006 |
taatgtccttgtttcatccaagcatcctaacattgatcttcctttccgaacaaaaatcctagttttgagctgcaactcttgtaactttgttgcacatatt |
11616907 |
T |
|
| Q |
872 |
gttctcaacatcacggaaagaaaaggttcatttgtcggattgaatccacaaataatcatttccctt-acatgtctgtaattgttcc-tgtgacatcatgt |
969 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||| |
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| T |
11616906 |
gttctcaacatcatggaaagaaaaggttcatttgtcggattgaatccacaaataatcatttcccttaacatgtctgtaattgttccttgtgacatcatgt |
11616807 |
T |
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| Q |
970 |
ctagtgcattgaatggttttcttgatatcattttgagtttatta |
1013 |
Q |
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| T |
11616806 |
ctagtgcattgaatggttttcttgatatcattttgagtttatta |
11616763 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 29 - 334
Target Start/End: Complemental strand, 11617710 - 11617405
Alignment:
| Q |
29 |
catgtcaaactagtccttttatcaaaacttgtaattctaannnnnnnagatcaatacctgtaatgagacatcatgatcaacatgcatgactttgggtggt |
128 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||| |||||| |
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| T |
11617710 |
catgtcaaactagtccttttatcaaaacttgtaattctaatttttttagatcaatacctgtaatgtgacatcatgatcaacatgcatgactttaggtggt |
11617611 |
T |
|
| Q |
129 |
gaatgatccattggattttcctgatgaggaggaataagggcagggtcccaacagacaaagtagatatctccatccaaatcacttcctgaacattcattag |
228 |
Q |
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| T |
11617610 |
gaatgatccattggattttcctgatgaggaggaataagggcagggtcccaacagacaaagtagatatctccatccaaatcacttcctgaacattcattag |
11617511 |
T |
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| Q |
229 |
gatgtggtctacacaagaaatcactttgaagtcagaaaacatcatcatacacataatgaatataatcttcgctatcaatcttctaaagtggtatatttgc |
328 |
Q |
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| T |
11617510 |
gatgtggtctacacaagaaatcactttgaagtcagaaaacatcatcatacgcataatgaatataatcttcgctatcaatcttctaaagtggtatatttgc |
11617411 |
T |
|
| Q |
329 |
agggac |
334 |
Q |
| |
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| |||| |
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| T |
11617410 |
atggac |
11617405 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 174 - 235
Target Start/End: Complemental strand, 11630461 - 11630400
Alignment:
| Q |
174 |
tcccaacagacaaagtagatatctccatccaaatcacttcctgaacattcattaggatgtgg |
235 |
Q |
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|||||||| ||||||||||| || || || | ||||||||| ||||||||||| |||||||| |
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| T |
11630461 |
tcccaacaaacaaagtagatgtccccgtctagatcacttccggaacattcatttggatgtgg |
11630400 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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