View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3215R-Insertion-2 (Length: 695)
Name: NF3215R-Insertion-2
Description: NF3215R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3215R-Insertion-2 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 643; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 643; E-Value: 0
Query Start/End: Original strand, 9 - 695
Target Start/End: Original strand, 52423407 - 52424093
Alignment:
| Q |
9 |
atctggactgcatggtggtggctatagtttgcatttctgggagtcacgcagtttctgcgttgcagtcatcgttatggagtttatttttcaggtcagtggc |
108 |
Q |
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| T |
52423407 |
atctggactgcatggtggtggctatagtttgcatttctgggagtcacgcagtttgtgcgttgcagtcatcgttgtggagtttatttttcaggtgagtggc |
52423506 |
T |
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| Q |
109 |
tttttgctctgttgatgcctcatttcctggaccttgtactgttagttttagtcttaggactctgtgtggtgtgtttttgctaattatgtggcgtattgtg |
208 |
Q |
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| T |
52423507 |
tttttgctctgttgatgcctcatttcgtggaccttgtactgttagttttagtcttaggactctgtgtggtgtgtctttgctaattatgtggcgtattgtg |
52423606 |
T |
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| Q |
209 |
aaggagaggcagttgatgaatggtattcttcctcttcagttgtcagtagctttgtcttaaggtggatgcggtttctctgactatttgtgttttagagtct |
308 |
Q |
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| T |
52423607 |
aaggagaggcagttggtgaatggtattcttcctcttctgttgtcagtagctttgtcttaaggtggatgcggtttctttgactatttgtgttttagagtct |
52423706 |
T |
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| Q |
309 |
ttgaatgttgttggtcatcttgtttccgtgctgagtattaactcttatttgagtaagttgcaagagattgatcctttgtttgattggactttttagcatt |
408 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52423707 |
ttgaatgttgttggtcatcttgtttccgtgctgagtattaactcttatttgagtaagttgcaagagattgatcctttgtttgattggactttttagcatt |
52423806 |
T |
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| Q |
409 |
ctccaagtttctattggttaggattttgcctcattgtgaactaattagcttgttccaattttggtttgttttggtctgttatggtttcagcttagtttct |
508 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52423807 |
ctccaagtttctattgattaggattttgcctcattgtgaactaattagcttgttccaattttggtttgttttggtctgttatggtttcagcttagtttct |
52423906 |
T |
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| Q |
509 |
agtatgggcagcttggtctctttagtcatcaaggttgttggttattttattttgcggtgttggggtgtagtggccgtctatccgttctatgttggagttt |
608 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
52423907 |
agtatgggcagcttggtctctttagtcatcaaggttgttggttattttattttgcggtgttggggtgtagtggccgtctatctgttctatgttggagttt |
52424006 |
T |
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| Q |
609 |
tttgccttattttggcgatttactgcatttgtttctgacttttgctgctttgtgtaagtgtagttcgaaattgttgtacactttttg |
695 |
Q |
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| T |
52424007 |
tttgccttattttggcgatttactgcatttgtttctgacttttgctgctttgtgtaagtgtagttcgaaatcgttgtacactttttg |
52424093 |
T |
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