View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3215R-Insertion-5 (Length: 415)
Name: NF3215R-Insertion-5
Description: NF3215R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3215R-Insertion-5 |
 | |
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| [»] chr4 (7 HSPs) |
| |
|
| [»] scaffold0602 (1 HSPs) |
| | |
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Alignment Details
Target: chr4 (Bit Score: 383; Significance: 0; HSPs: 7)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 383; E-Value: 0
Query Start/End: Original strand, 6 - 415
Target Start/End: Complemental strand, 8642643 - 8642233
Alignment:
| Q |
6 |
tcactcattttattatatgataaaccaagtgttaacattctattttttcttttgaatttcagctaccttcactcaagcctgtataatggaaattctcact |
105 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
8642643 |
tcactcattttattatatgataaaccaagtgttaacattctatttcttcttttgaatttcagctaccttcactcaagcctgtataatggaaattctcact |
8642544 |
T |
|
| Q |
106 |
tcagttggttccaaattagttgagtttactgttgagcctgttctcagacaagcaagatatgtgctttttt-acaagtgtaatttgaataagctatctaaa |
204 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||| |||||||||||| |
|
|
| T |
8642543 |
tcagttggttccaaattagttgagtttactgttgagcctgttctcagacaagcaagatatgtgctttttttacaagtgcaatttgaagaagctatctaaa |
8642444 |
T |
|
| Q |
205 |
gatttaaaagatctagaggctgcaagacaaagagtcaatcattccattgaagaagctaagtcaaatggcgaagaaattgagaatgatgtcttaaattgga |
304 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
8642443 |
gatttagaagatctagaggctgcaagacaaagagtcaatcattccattgaagaagctaagtcaaatggcgaagaaattgagaatgatgtcttaaattgga |
8642344 |
T |
|
| Q |
305 |
tgaaagaagtgaatcaagtcattaacaaagttaacatgctccacaacgatccaaaccattccaaagccggttgctatcgttgggacttccctaacttgat |
404 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8642343 |
tgaaagaagtgaatcaagtcattaacaaagttaacatgctccacaacgatccaaaccattccaaagccggttgctatcgttgggacttccctaacttgat |
8642244 |
T |
|
| Q |
405 |
ttaccaccgtc |
415 |
Q |
| |
|
|||||| |||| |
|
|
| T |
8642243 |
ttaccaacgtc |
8642233 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 363; E-Value: 0
Query Start/End: Original strand, 6 - 415
Target Start/End: Original strand, 8616407 - 8616817
Alignment:
| Q |
6 |
tcactcattttattatatgataaaccaagtgttaacattctattttttcttttgaatttcagctaccttcactcaagcctgtataatggaaattctcact |
105 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8616407 |
tcactcatttttttatatgataaaccaagtgttaacattctatttcttcttttgaatttcagctaccttcactcaagcctgtataatggaaattctcact |
8616506 |
T |
|
| Q |
106 |
tcagttggttccaaattagttgagtttactgttgagcctgttctcagacaagcaagatatgtgctttt-ttacaagtgtaatttgaataagctatctaaa |
204 |
Q |
| |
|
||||||||||| ||| ||||||||||||| ||||||||| |||||||||||||||||||||||||||| ||||||||| |||||||| |||||||||||| |
|
|
| T |
8616507 |
tcagttggttcaaaactagttgagtttacggttgagcctattctcagacaagcaagatatgtgctttttttacaagtgcaatttgaagaagctatctaaa |
8616606 |
T |
|
| Q |
205 |
gatttaaaagatctagaggctgcaagacaaagagtcaatcattccattgaagaagctaagtcaaatggcgaagaaattgagaatgatgtcttaaattgga |
304 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8616607 |
gatttagaagatctagaggctgcaagacaaagagtcaatcattccattgaagaagctaagtcaaatggcgaagaaattgagaatgatgtcttaaattgga |
8616706 |
T |
|
| Q |
305 |
tgaaagaagtgaatcaagtcattaacaaagttaacatgctccacaacgatccaaaccattccaaagccggttgctatcgttgggacttccctaacttgat |
404 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8616707 |
tgaaagaagtgaatcaagtcattaacaaagttaacatgctccacaacgatccaaaccattccaaagccggttgctatcgttgggacttccctaacttgat |
8616806 |
T |
|
| Q |
405 |
ttaccaccgtc |
415 |
Q |
| |
|
|||||| |||| |
|
|
| T |
8616807 |
ttaccatcgtc |
8616817 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 148; E-Value: 6e-78
Query Start/End: Original strand, 41 - 415
Target Start/End: Complemental strand, 34397089 - 34396717
Alignment:
| Q |
41 |
cattctattttttcttttgaatttcagctaccttcactcaagcctg-tataatggaaattctcacttcagttggttccaaattagttgagtttactgttg |
139 |
Q |
| |
|
|||||||||| || |||||||||||||| | |||||||||| || ||||||||| ||| | ||||||||||||| |||||||||||||| ||||| |
|
|
| T |
34397089 |
cattctatttcttgttttgaatttcagcaatcttcactcaaacccaatataatggatattgttgcttcagttggttcaaaattagttgagttagttgttg |
34396990 |
T |
|
| Q |
140 |
agcctgttctcagacaagcaagatatgtgcttttttacaagtgtaatttgaataagctatctaaagatttaaaagatctagaggctgcaagacaaagagt |
239 |
Q |
| |
|
| ||| || ||||||||||||||||||||| ||||||| || |||| | || |||||||||||||||||||||||||| ||||||||| ||||||| |
|
|
| T |
34396989 |
atcctagtccgagacaagcaagatatgtgcttctttacaaatgacatttcatgaatctatctaaagatttaaaagatctagaagctgcaagagaaagagt |
34396890 |
T |
|
| Q |
240 |
caatcattccattgaagaagctaagtcaaatggcgaagaaattgagaatgatgtcttaaattggatgaaagaagtgaatcaagtcattaacaaagttaac |
339 |
Q |
| |
|
||| |||| ||||||||||| ||||||||||||||||||||||| ||||| ||| ||||||| || ||||||||||| ||||||||||| ||||| || |
|
|
| T |
34396889 |
caagcatttcattgaagaagtaaagtcaaatggcgaagaaattgaaaatgacgtc-gaaattggctggaagaagtgaat-aagtcattaacgaagtttac |
34396792 |
T |
|
| Q |
340 |
atgctccacaacgatccaaaccattccaaagccggttgctatcgttgggacttccctaacttgatttaccaccgtc |
415 |
Q |
| |
|
||| | |||||||||| ||||||||||||| || ||||||||||||||| |||||||||| ||||||||||||| |
|
|
| T |
34396791 |
atgttgcacaacgatctaaaccattccaaaattgg-tgctatcgttgggacctccctaacttaatttaccaccgtc |
34396717 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 41 - 415
Target Start/End: Original strand, 8307883 - 8308256
Alignment:
| Q |
41 |
cattctattttttcttttgaatttcagctaccttcactcaagcctg-tataatggaaattctcacttcagttggttccaaattagttgagtttactgttg |
139 |
Q |
| |
|
|||||||||| || |||||||||||| | | |||||||||| || | |||||| || | | | |||||||||||||| |||||||||||||| |||||| |
|
|
| T |
8307883 |
cattctatttcttgttttgaatttcaacaaacttcactcaaacccggtataatagataatgttacttcagttggttcaaaattagttgagttagctgttg |
8307982 |
T |
|
| Q |
140 |
agcctgttctcagacaagcaagatatgtgcttttttacaagtgtaatttgaataagctatctaaagatttaaaagatctagaggctgcaagacaaagagt |
239 |
Q |
| |
|
| | | ||| ||||||||||||||| ||| | || |||| |||||||| | ||||||||||||||||||||||| ||| ||||||||||| ||||||| |
|
|
| T |
8307983 |
atcttagtctgagacaagcaagatatatgcctcttaacaaatgtaatttcatgaagctatctaaagatttaaaagacctataggctgcaagaaaaagagt |
8308082 |
T |
|
| Q |
240 |
caatcattccattgaagaagctaagtcaaatggcgaagaaattgagaatgatgtcttaaattggatgaaagaagtgaatcaagtcattaacaaagttaac |
339 |
Q |
| |
|
||| |||||||||||||||| |||||||||||||||||| |||| ||||| || ||||||| || || |||||||| ||||||||| | |||||||| |
|
|
| T |
8308083 |
caagcattccattgaagaagaaaagtcaaatggcgaagaatttgaaaatgacatc-gaaattggttggaataagtgaat-aagtcattagcgaagttaac |
8308180 |
T |
|
| Q |
340 |
atgctccacaacgatccaaaccattccaaagccggttgctatcgttgggacttccctaacttgatttaccaccgtc |
415 |
Q |
| |
|
||| | ||||||||||||||||| ||||||| || |||||||| |||||||||| |||||||||||||||||||| |
|
|
| T |
8308181 |
atgttgcacaacgatccaaaccactccaaagttgggtgctatcgctgggacttccttaacttgatttaccaccgtc |
8308256 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 41 - 415
Target Start/End: Original strand, 8309020 - 8309376
Alignment:
| Q |
41 |
cattctattttttcttttgaatttcagctaccttcactcaagcct-gtataatggaaattctcacttcagttggttccaaattagttgagtttactgttg |
139 |
Q |
| |
|
||||||||||||| |||||||||||||| | |||||||||| || |||||||||| | | | ||| ||||||||| |||||||||||||| |||| |
|
|
| T |
8309020 |
cattctattttttgttttgaatttcagcaagcttcactcaaacccagtataatggataatattactatagttggttcaaaattagttgagttagtcgttg |
8309119 |
T |
|
| Q |
140 |
agcctgttctcagacaagcaagatatgtgcttttttacaagtgtaatttgaataagctatctaaagatttaaaagatctagaggctgcaagacaaagagt |
239 |
Q |
| |
|
| | | ||| ||||||||||||||||||||| ||||||| |||||||| | ||| |||||||||||||||||||||| |||| ||||||| ||||| | |
|
|
| T |
8309120 |
atcatagtctgagacaagcaagatatgtgcttctttacaaatgtaatttcatgaagatatctaaagatttaaaagatctggaggttgcaagagaaagaat |
8309219 |
T |
|
| Q |
240 |
caatcattccattgaagaagctaagtcaaatggcgaagaaattgagaatgatgtcttaaattggatgaaagaagtgaatcaagtcattaacaaagttaac |
339 |
Q |
| |
|
||| ||||||||||||||||| |||||||||||||||||| || |||| || ||||||||||| ||||||||||| ||||||| |
|
|
| T |
8309220 |
caagcattccattgaagaagcaaagtcaaatggcgaagaa-----------------aatttggctggaagaagtgaat-aagtcattaac-gagttaac |
8309300 |
T |
|
| Q |
340 |
atgctccacaacgatccaaaccattccaaagccggttgctatcgttgggacttccctaacttgatttaccaccgtc |
415 |
Q |
| |
|
||| | ||||| ||||||||||| ||||||| | |||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
8309301 |
atgttgcacaatgatccaaaccactccaaagttgtgtgctatcgctgggacttccctaacttgatttaccaccgtc |
8309376 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 60 - 276
Target Start/End: Complemental strand, 34392951 - 34392734
Alignment:
| Q |
60 |
aatttcagctaccttcactcaagcct-gtataatggaaattctcacttcagttggttccaaattagttgagtttactgttgagcctgttctcagacaagc |
158 |
Q |
| |
|
||||||||| | |||||||||| || |||||||||| ||| | ||||||||||||| |||||||||||||| |||||| ||| ||| |||||||| |
|
|
| T |
34392951 |
aatttcagcaagcttcactcaaacccagtataatggatattgttgcttcagttggttcaaaattagttgagttggttgttgatcctagtctgagacaagc |
34392852 |
T |
|
| Q |
159 |
aagatatgtgcttttttacaagtgtaatttgaataagctatctaaagatttaaaagatctagaggctgcaagacaaagagtcaatcattccattgaagaa |
258 |
Q |
| |
|
||||||| ||||| ||||||| || ||||| | ||| ||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||| |
|
|
| T |
34392851 |
aagatatatgcttatttacaaatgaaatttcatgaagttatctaaagatttaaaagatctagaggctgcaagagaaagagtcaagcattccattgaagaa |
34392752 |
T |
|
| Q |
259 |
gctaagtcaaatggcgaa |
276 |
Q |
| |
|
|| || |||||||||||| |
|
|
| T |
34392751 |
gcaaattcaaatggcgaa |
34392734 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 311 - 410
Target Start/End: Complemental strand, 34392732 - 34392634
Alignment:
| Q |
311 |
aagtgaatcaagtcattaacaaagttaacatgctccacaacgatccaaaccattccaaagccggttgctatcgttgggacttccctaacttgatttacca |
410 |
Q |
| |
|
|||||||| ||||||||||| ||||||||||| | |||||||||||||||||||| |||| || ||||||||||||||| ||||||||||||||||||| |
|
|
| T |
34392732 |
aagtgaat-aagtcattaacgaagttaacatgttgcacaacgatccaaaccattcaaaagttgggtgctatcgttgggacgtccctaacttgatttacca |
34392634 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0602 (Bit Score: 356; Significance: 0; HSPs: 1)
Name: scaffold0602
Description:
Target: scaffold0602; HSP #1
Raw Score: 356; E-Value: 0
Query Start/End: Original strand, 6 - 411
Target Start/End: Original strand, 6827 - 7234
Alignment:
| Q |
6 |
tcactcattttattatatgataaaccaagtgttaacattctattttttcttttgaatttcagctaccttcactcaagcctgtataatggaaattctcact |
105 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6827 |
tcactcatttttttatatgataaaccaagtgttaacattctatttcttcttttgaatttcagctaccttcactcaagcctgtataatggaaattctcact |
6926 |
T |
|
| Q |
106 |
tcagttggttccaaattagttgagtttactgttgagcctgttctcagacaagcaagatatgtgctttttt-acaagt-gtaatttgaataagctatctaa |
203 |
Q |
| |
|
||||||||||| ||| ||||||||||||| ||||||||| |||||||||||||||||||||||||||||| |||||| | |||||||| ||||||||||| |
|
|
| T |
6927 |
tcagttggttcaaaactagttgagtttacggttgagcctattctcagacaagcaagatatgtgctttttttacaagttgcaatttgaagaagctatctaa |
7026 |
T |
|
| Q |
204 |
agatttaaaagatctagaggctgcaagacaaagagtcaatcattccattgaagaagctaagtcaaatggcgaagaaattgagaatgatgtcttaaattgg |
303 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7027 |
agatttagaagatctagaggctgcaagacaaagagtcaatcattccattgaagaagctaagtcaaatggcgaagaaattgagaatgatgtcttaaattgg |
7126 |
T |
|
| Q |
304 |
atgaaagaagtgaatcaagtcattaacaaagttaacatgctccacaacgatccaaaccattccaaagccggttgctatcgttgggacttccctaacttga |
403 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7127 |
atgaaagaagtgaatcaagtcattaacaaagttaacatgctccacaacgatccaaaccattccaaagccggttgctatcgttgggacttccctaacttga |
7226 |
T |
|
| Q |
404 |
tttaccac |
411 |
Q |
| |
|
|||||||| |
|
|
| T |
7227 |
tttaccac |
7234 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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