View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3215R-Insertion-6 (Length: 392)
Name: NF3215R-Insertion-6
Description: NF3215R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3215R-Insertion-6 |
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Alignment Details
Target: chr8 (Bit Score: 215; Significance: 1e-118; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 9 - 227
Target Start/End: Complemental strand, 9049724 - 9049506
Alignment:
| Q |
9 |
gcaacttccacagcagcttgagcagtagctcttgctgcctcagctgtagctatagccacagcaagagcatgtttctcatcctgatctgtccttgaagcca |
108 |
Q |
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| T |
9049724 |
gcaacttccacagcagcttgagcagtagctcttgctgcctcagctgtagccatagccacagcaagagcatgtttctcatcctgatctgtccttgaagcca |
9049625 |
T |
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| Q |
109 |
cacttgtagcagtaaccacatcatgcttcaattttgttggtgtactttgttgagtattattcactgtttcatgattcactggtttcctaaaaatccacct |
208 |
Q |
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| T |
9049624 |
cacttgtagcagtaaccacatcatgcttcaattttgttggtgtactttgttgagtattattcactgtttcatgattcactggtttcctaaaaatccacct |
9049525 |
T |
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| Q |
209 |
tcttttttctctcttctac |
227 |
Q |
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||||||||||||||||||| |
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| T |
9049524 |
tcttttttctctcttctac |
9049506 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 99; E-Value: 9e-49
Query Start/End: Original strand, 254 - 392
Target Start/End: Complemental strand, 9049480 - 9049342
Alignment:
| Q |
254 |
ttgttttcattctttcaatacttcatttccatgaattagatagtaaaaacaaaagggtcattaaaactacaaagacaaatgaaaaatttacagaattttt |
353 |
Q |
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||||||||||||||||||| |||||||||||||||||| | |||| |||||||||||||| |||||||| ||| | |||||||||||| ||||||||||| |
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| T |
9049480 |
ttgttttcattctttcaatgcttcatttccatgaattacaaagtagaaacaaaagggtcactaaaactataaacaaaaatgaaaaattaacagaattttt |
9049381 |
T |
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| Q |
354 |
tgaagtaccttttcttcatcttcttcttgatcacaatct |
392 |
Q |
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| T |
9049380 |
ttaagtaccttttcttcatcttcttcttgatcacaatct |
9049342 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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