View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3217_high_5 (Length: 202)
Name: NF3217_high_5
Description: NF3217
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3217_high_5 |
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Alignment Details
Target: chr7 (Bit Score: 64; Significance: 3e-28; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 64; E-Value: 3e-28
Query Start/End: Original strand, 120 - 183
Target Start/End: Original strand, 48174195 - 48174258
Alignment:
| Q |
120 |
gagtgaaggaaggttccctcaaaagaggttgaaggaacccgcaatgcaagagagggaagcagag |
183 |
Q |
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| T |
48174195 |
gagtgaaggaaggttccctcaaaagaggttgaaggaacccgcaatgcaagagagggaagcagag |
48174258 |
T |
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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 11 - 48
Target Start/End: Original strand, 48174074 - 48174111
Alignment:
| Q |
11 |
tgtcgaagaaaatagtttggttcaagaacaatgagaac |
48 |
Q |
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| T |
48174074 |
tgtcgaaaaaaatattttggttcaagaacaatgagaac |
48174111 |
T |
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