View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3217_high_6 (Length: 201)
Name: NF3217_high_6
Description: NF3217
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3217_high_6 |
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Alignment Details
Target: chr1 (Bit Score: 172; Significance: 1e-92; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 172; E-Value: 1e-92
Query Start/End: Original strand, 1 - 188
Target Start/End: Original strand, 32756295 - 32756482
Alignment:
| Q |
1 |
ataaagttctttccctgatatgtacattatgtcttgctctttaccctgtcatttgtaatcatgacatgtacatttcttgttcatcctttttggtcaatac |
100 |
Q |
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| T |
32756295 |
ataaagttgtttccctgatatgtacattatgtcttgctctttaccctgtcatttgtaatcatgacatgtacatttcttgttcatccttttaggtcaatac |
32756394 |
T |
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| Q |
101 |
ttagaagtggaactgaagaggcaagtttttaaaagccaatgtgtgatacaggccagtttctaaattttaagtcaatgtgtgatttgtg |
188 |
Q |
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| T |
32756395 |
ttagaagtggaactgaagaggccagtttttaaaagccaatgtgtgatacaggccagtttctaaattttaagtcaacgtgtgatttgtg |
32756482 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 172; E-Value: 1e-92
Query Start/End: Original strand, 1 - 188
Target Start/End: Original strand, 32766675 - 32766862
Alignment:
| Q |
1 |
ataaagttctttccctgatatgtacattatgtcttgctctttaccctgtcatttgtaatcatgacatgtacatttcttgttcatcctttttggtcaatac |
100 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
32766675 |
ataaagttgtttccctgatatgtacattatgtcttgctctttaccctgtcatttgtaatcatgacatgtacatttcttgttcatccttttaggtcaatac |
32766774 |
T |
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| Q |
101 |
ttagaagtggaactgaagaggcaagtttttaaaagccaatgtgtgatacaggccagtttctaaattttaagtcaatgtgtgatttgtg |
188 |
Q |
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|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
32766775 |
ttagaagtggaactgaagaggccagtttttaaaagccaatgtgtgatacaggccagtttctaaattttaagtcaacgtgtgatttgtg |
32766862 |
T |
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