View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3217_low_1 (Length: 478)
Name: NF3217_low_1
Description: NF3217
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3217_low_1 |
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Alignment Details
Target: chr3 (Bit Score: 420; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 420; E-Value: 0
Query Start/End: Original strand, 8 - 463
Target Start/End: Original strand, 45128869 - 45129325
Alignment:
| Q |
8 |
cagcacagaggaaatgcaaacatcaagagtgacatcatatttgtccacaaatctactagtttctttactcaccaatcccataacctttgaacaaagaggt |
107 |
Q |
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| T |
45128869 |
cagcacagaggaaatgcaaacatcaagagtgacatcatatttgtccacaaatctactagtttctttactcaccaatcccataacctttgaacaaagaggt |
45128968 |
T |
|
| Q |
108 |
gaaactgagtctctattgtactcacttacataacgagagtaattacacactctagtgaacatgttgtaagttgcatctgatattagtccatgtgaccaaa |
207 |
Q |
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| T |
45128969 |
gaaactgagtctctattgtactcacttacataacgagagtaattacacactctagtgaacatgttgtaagttgcatctgatattagtccatgtgaccaaa |
45129068 |
T |
|
| Q |
208 |
agaattcagcccttgaattgaaatcagttgcatattctagaactggatttcccaactgcaattcaactttggtatcaacagctagcaaattgtatggaat |
307 |
Q |
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| T |
45129069 |
agaattcagcccttgaattgaaatcagttgcatattctagaactggatttcccaactgcaattcaactttggtatcaacagctagcaaattgtatggaat |
45129168 |
T |
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| Q |
308 |
-nnnnnnntcatcaatgtagcattacttaccgctatgcctttaaggttgaatatcttgtttcttttgttcatttcaatcataagctttgcaagttgagga |
406 |
Q |
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| T |
45129169 |
aaaaaaaatcatcaatgtagccttacttacggctatgcctttaaggttgaatatcttgtttcttttgttcatttcaatcataagctttgcaagttgagga |
45129268 |
T |
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| Q |
407 |
acataatgacctgaaatacatgcataaattttattaattagtaatgattgatgtaac |
463 |
Q |
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| T |
45129269 |
acataatgacctgaaatacatgcataaattttattaattagtaatgattgatgtaac |
45129325 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 85; Significance: 3e-40; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 9 - 269
Target Start/End: Original strand, 40280725 - 40280985
Alignment:
| Q |
9 |
agcacagaggaaatgcaaacatcaagagtgacatcatatttgtccacaaatctactagtttctttactcaccaatcccataacctttgaacaaagaggtg |
108 |
Q |
| |
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||||| ||||||||||| |||||||| || |||||||||||||||||||| | || |||||| | || || | ||| |||||||||||||| | | |
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| T |
40280725 |
agcactgaggaaatgcatacatcaagggtaacatcatatttgtccacaaacttgctggtttctctgcttacttggctcatgacctttgaacaaagcaggg |
40280824 |
T |
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| Q |
109 |
aaactgagtctctattgtactcacttacataacgagagtaattacacactctagtgaacatgttgtaagttgcatctgatattagtccatgtgaccaaaa |
208 |
Q |
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||| |||| ||||| ||||||||||||||| | || ||||| || || |||||||| |||||||||| ||||||||| | |||||| ||||| || |
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| T |
40280825 |
aaatggagtttctatagtactcacttacatactgcgaataattgcagcctgcggtgaacattttgtaagttgaatctgatatcaatccatgagaccagaa |
40280924 |
T |
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| Q |
209 |
gaattcagcccttgaattgaaatcagttgcatattctagaactggatttcccaactgcaat |
269 |
Q |
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| T |
40280925 |
gaactcagcccttgaattgaagtcagtggcatattctagaagtggatttcccaactgcaat |
40280985 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 194 - 256
Target Start/End: Original strand, 6632284 - 6632346
Alignment:
| Q |
194 |
tccatgtgaccaaaagaattcagcccttgaattgaaatcagttgcatattctagaactggatt |
256 |
Q |
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|||||| ||||||||||| ||||| |||||||| ||||| |||||| |||||| ||||||||| |
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| T |
6632284 |
tccatgagaccaaaagaactcagctcttgaattaaaatctgttgcaaattctaaaactggatt |
6632346 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 11 - 76
Target Start/End: Original strand, 6632101 - 6632166
Alignment:
| Q |
11 |
cacagaggaaatgcaaacatcaagagtgacatcatatttgtccacaaatctactagtttctttact |
76 |
Q |
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|||||| || || ||||||||||||||||||||||| ||||| |||||||| || |||||| |||| |
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| T |
6632101 |
cacagaagatatacaaacatcaagagtgacatcatacttgtcaacaaatctgcttgtttctgtact |
6632166 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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