View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3217_low_2 (Length: 310)
Name: NF3217_low_2
Description: NF3217
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3217_low_2 |
 | |
|
| [»] chr4 (2 HSPs) |
| |
|
Alignment Details
Target: chr4 (Bit Score: 267; Significance: 1e-149; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 16 - 310
Target Start/End: Original strand, 43052454 - 43052748
Alignment:
| Q |
16 |
tcatatcatagctgaagcaatatcagcaatccgcggtattggccttagatggtcaggtccaattacaccgaaagaaatggaacatgtaaaacaatatgtc |
115 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
43052454 |
tcatatcatagctgaagcaatatcaacaatccgcggtattggccttagatggtcaggtccaattacaccgaaagaaatggaatgtgtaaaacaatatgtc |
43052553 |
T |
|
| Q |
116 |
ctagcaaagtatccagaatatgcaaatctcattgaaggcgatggaagtggtacaggcatgtccagttttatgatcaatggggagcctttaaaattaccac |
215 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43052554 |
ctagcaaagtatccagaatatgcaaatctcattgaaggcgatggaagtggtacagatatgtccagttttatgatcaatggggagcctttaaaattaccac |
43052653 |
T |
|
| Q |
216 |
cgtcagatgatagtagaaagtcattaagaccatcttataattttggaagcgaccctcctgaaatggatatgacacagttagagccatcaagacta |
310 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
43052654 |
tgtcagatgatagtagaaagtcattaagaccatcttataattttggaagcgaccctcctgaaatggatatgacacagctagagccatcaagacta |
43052748 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 133; E-Value: 4e-69
Query Start/End: Original strand, 16 - 310
Target Start/End: Complemental strand, 42655527 - 42655236
Alignment:
| Q |
16 |
tcatatcatagctgaagcaatatcagcaatccgcggtattggccttagatggtcaggtccaattacaccgaaagaaatggaacatgtaaaacaatatgtc |
115 |
Q |
| |
|
||||||||||||||||||||||||| | ||||||| |||| ||| ||||||||||||||||| |||| ||||||||||||| ||||| | |||||||| |
|
|
| T |
42655527 |
tcatatcatagctgaagcaatatcaactatccgcgacattgacctaagatggtcaggtccaatcacacagaaagaaatggaatatgtagaggaatatgtc |
42655428 |
T |
|
| Q |
116 |
ctagcaaagtatccagaatatgcaaatctcattgaaggcgatggaagtggtacaggcatgtccagttttatgatcaatggggagcctttaaaattaccac |
215 |
Q |
| |
|
|||||||||||||| |||||||||||||| |||||||| ||||||||||||| || |||||| |||||||| ||||||| |||||||| |||||||| |
|
|
| T |
42655427 |
ctagcaaagtatcctgaatatgcaaatctaattgaaggagatggaagtggtatagacatgtcaagttttatcatcaatgaggagccttcggaattaccaa |
42655328 |
T |
|
| Q |
216 |
cgtcagatgatagtagaaagtcattaagaccatcttataattttggaagcgaccctcctgaaatggatatgacacagttagagccatcaagacta |
310 |
Q |
| |
|
|||||||||||| ||||||||| |||| | ||| |||||||||| ||| |||||| ||||||| |||||||||||||||||||||||| |
|
|
| T |
42655327 |
tgtcagatgatagaagaaagtcaccaagatcgcctt---cttttggaagcaaccttcctgagatggatagaacacagttagagccatcaagacta |
42655236 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 51; Significance: 3e-20; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 60 - 194
Target Start/End: Complemental strand, 45479716 - 45479582
Alignment:
| Q |
60 |
ttagatggtcaggtccaattacaccgaaagaaatggaacatgtaaaacaatatgtcctagcaaagtatccagaatatgcaaatctcattgaaggcgatgg |
159 |
Q |
| |
|
||||||||||||||||||| ||||| |||||||||||| |||| |||| ||||| ||||||||||||||||||||| ||| | |||||||| ||||| |
|
|
| T |
45479716 |
ttagatggtcaggtccaatcacaccaaaagaaatggaatatgttgaacagtatgttctagcaaagtatccagaatattcaaggttgattgaaggagatgg |
45479617 |
T |
|
| Q |
160 |
aagtggtacaggcatgtccagttttatgatcaatg |
194 |
Q |
| |
|
|| ||| | || |||||| | ||||| ||||||| |
|
|
| T |
45479616 |
aaatgggatagacatgtctacctttatcatcaatg |
45479582 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University