View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3218_high_18 (Length: 309)
Name: NF3218_high_18
Description: NF3218
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3218_high_18 |
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Alignment Details
Target: chr7 (Bit Score: 102; Significance: 1e-50; HSPs: 8)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 91 - 252
Target Start/End: Complemental strand, 29288571 - 29288410
Alignment:
| Q |
91 |
aacaaaataaattgaattcttttccatcttggagaaagaagaggccgacaaagaaattgaatcaccacggtttccgacaaataaaatgttgtcttccaaa |
190 |
Q |
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| T |
29288571 |
aacaacataaattgaatccttttccaacttggagaaagcagaggccggcacagaaatggaatcaccaacacttccgacaaataaaatgttgtcttccaaa |
29288472 |
T |
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| Q |
191 |
ctctcaagtttgttcatttgttcaagttttccactctggccatccagttctaatttgtaaac |
252 |
Q |
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| T |
29288471 |
ctctcaagtttgttcatctgttcaagttttccactctgggcatccagttccaatttgaaaac |
29288410 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 91 - 247
Target Start/End: Complemental strand, 29283132 - 29282976
Alignment:
| Q |
91 |
aacaaaataaattgaattcttttccatcttggagaaagaagaggccgacaaagaaattgaatcaccacggtttccgacaaataaaatgttgtcttccaaa |
190 |
Q |
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| T |
29283132 |
aacaaaataaattgaatccttttccaacttggagaaagcagaggctggcacagatattgaatcaccaacacttccgacaaataaaatgctgtcttccaaa |
29283033 |
T |
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| Q |
191 |
ctctcaagtttgttcatttgttcaagttttccactctggccatccagttctaatttg |
247 |
Q |
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| T |
29283032 |
ctctcaagtttgttcatgtgttctagttttccactctgggcatccagttccaatttg |
29282976 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 94 - 249
Target Start/End: Original strand, 28612118 - 28612270
Alignment:
| Q |
94 |
aaaataaattgaattcttttccatcttggagaaagaagaggccgacaaagaaattgaatcaccacggtttccgacaaataaaatgttgtcttccaaactc |
193 |
Q |
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| T |
28612118 |
aaaataaatcgaatctttttctaacttggagtgacaagaggctggcacagaaattgaatcaccaa---ttccgacaaataaaatgttgtcttccaaactc |
28612214 |
T |
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| Q |
194 |
tcaagtttgttcatttgttcaagttttccactctggccatccagttctaatttgta |
249 |
Q |
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| T |
28612215 |
tcaagtttgttcatctgttcaagttttccactctggacatccagttccaatttgta |
28612270 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 34 - 229
Target Start/End: Complemental strand, 29270801 - 29270609
Alignment:
| Q |
34 |
acttccatcctgcgcattatagatatgtaactcaaaaccatctttatcactttcatcaacaaaataaattgaattcttttccatcttggagaaagaagag |
133 |
Q |
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| T |
29270801 |
acttccatccttcgcattatagatctgtaactctaaatcatcttcgtcgccatcataaataaaataaattgaatccttttcaaactttgagaaacaagcg |
29270702 |
T |
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| Q |
134 |
gccgacaaagaaattgaatcaccacggtttccgacaaataaaatgttgtcttccaaactctcaagtttgttcatttgttcaagttttccactctgg |
229 |
Q |
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| T |
29270701 |
gctgacacagaaattgaatcacc---gattccgacaaataaaatgttgttctctaaactctcaagtttttttatttgttcaacttttccgctctgg |
29270609 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 94 - 223
Target Start/End: Complemental strand, 28623456 - 28623327
Alignment:
| Q |
94 |
aaaataaattgaattcttttccatcttggagaaagaagaggccgacaa---agaaattgaatcaccacggtttccgacaaataaaatgttgtcttccaaa |
190 |
Q |
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||||||||| |||| ||||||| |||||||||| |||||| ||||| ||||||||||| || | |||| ||||| |||||||||||||||||| |
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| T |
28623456 |
aaaataaatcgaatcattttccaacttggagaaacaagaggttgacaacgaagaaattgaattccc---gattccaacaaaaaaaatgttgtcttccaaa |
28623360 |
T |
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| Q |
191 |
ctctcaagtttgttcatttgttcaagttttcca |
223 |
Q |
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|||| |||||||||||||||||||||||||||| |
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| T |
28623359 |
ctcttaagtttgttcatttgttcaagttttcca |
28623327 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 118 - 252
Target Start/End: Complemental strand, 28615567 - 28615433
Alignment:
| Q |
118 |
cttggagaaagaagaggccgacaaagaaattgaatcaccacggtttccgacaaataaaatgttgtcttccaaactctcaagtttgttcatttgttcaagt |
217 |
Q |
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|||||||||| ||||||| |||| ||||| ||||| ||||| | || || |||||||||||||||| ||||||||| ||| ||||||||||| ||||| |
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| T |
28615567 |
cttggagaaacaagaggcagacacagaaaatgaattaccacaatatctgataaataaaatgttgtctcccaaactcttaagcatgttcatttgtacaagt |
28615468 |
T |
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| Q |
218 |
tttccactctggccatccagttctaatttgtaaac |
252 |
Q |
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| T |
28615467 |
tttccactcttggtgtccagtttcaatttgtaaac |
28615433 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 162 - 247
Target Start/End: Complemental strand, 29275537 - 29275452
Alignment:
| Q |
162 |
ttccgacaaataaaatgttgtcttccaaactctcaagtttgttcatttgttcaagttttccactctggccatccagttctaatttg |
247 |
Q |
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|||| ||||||||||||||| ||||||||||||||||||||| |||||||||| |||| | |||||| | |||||||| |||||| |
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| T |
29275537 |
ttccaacaaataaaatgttgctttccaaactctcaagtttgttgatttgttcaactttttcgctctgggcgtccagttccaatttg |
29275452 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 219 - 277
Target Start/End: Complemental strand, 28622025 - 28621967
Alignment:
| Q |
219 |
ttccactctggccatccagttctaatttgtaaacatcaaaattatacgaggacttgtca |
277 |
Q |
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| T |
28622025 |
ttccactctgaacatccagttctaatttgtaaacatcaattttatatgaggacttgtca |
28621967 |
T |
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