View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3218_high_22 (Length: 278)
Name: NF3218_high_22
Description: NF3218
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3218_high_22 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 270; Significance: 1e-151; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 270; E-Value: 1e-151
Query Start/End: Original strand, 1 - 278
Target Start/End: Original strand, 46813732 - 46814009
Alignment:
| Q |
1 |
agttaacaaaagccccttttccatgaatcccagttgcaaaattcttcacaacctgaatcccattttcaccaaccaagaaactgttatccagagcaccaag |
100 |
Q |
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| T |
46813732 |
agttaacaaaaaccccttttccatgaatcccagttgcaaaattcttcacaacctgaatcccattttcaccaaccaagaaactgttatccagagcaccaag |
46813831 |
T |
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| Q |
101 |
cgccaagctctgaatcccaccatttgcagcttcctcaaattcctccctcaaatcctgacttgctctcactggcgtggccgaaccaggactcttcgagaag |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
46813832 |
cgccaagctctgaatcccaccatttgcagcttcctcaaattcctccctcaaatcctgactcgctctcactggcgtggccgaaccaggactcttcgagaag |
46813931 |
T |
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| Q |
201 |
ctatcatcagcatcttcccacatagactcatcagcgacttccggtttcgcccacccaagaaaatccttaccataaacc |
278 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46813932 |
ctatcatcagcatcttcccacatagactcatcagcgacttccggtttcgcccacccaagaaaatccttaccataaacc |
46814009 |
T |
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