View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3218_high_23 (Length: 261)
Name: NF3218_high_23
Description: NF3218
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3218_high_23 |
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Alignment Details
Target: chr1 (Bit Score: 220; Significance: 1e-121; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 17 - 252
Target Start/End: Complemental strand, 30545726 - 30545491
Alignment:
| Q |
17 |
catttaaaatcatgaaagaattagagagcactaatgaaacttagatcacaacaatagcatagagtactaatgaaacttagtgctaaagaaacatactatt |
116 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||| |||||||||||||||||| |
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| T |
30545726 |
catttaaaatcatgaaagaattagagagcactaatgaaacttagatcacaacaatagcagagagtactaatgaaacctagtactaaagaaacatactatt |
30545627 |
T |
|
| Q |
117 |
tgcaaacacagattacaacaataacattgtgcaagagtttttcctcttatttgttcttatctaggggcaaggcagttcattctttcatggaaatcagtgc |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30545626 |
tgcaaacacagattacaacaataacattgtgcaagagtttttcctcttatttgttcttatctaggggcaaggcagttcattctttcatggaaatcagtgc |
30545527 |
T |
|
| Q |
217 |
atattttgctactgtgttataatctctcttctctgt |
252 |
Q |
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|||||||||||||||||||||||||||||| ||||| |
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| T |
30545526 |
atattttgctactgtgttataatctctcttttctgt |
30545491 |
T |
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