View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3218_high_27 (Length: 251)
Name: NF3218_high_27
Description: NF3218
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3218_high_27 |
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| [»] chr8 (7 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 193; Significance: 1e-105; HSPs: 7)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 20 - 251
Target Start/End: Original strand, 12185097 - 12185329
Alignment:
| Q |
20 |
aaacagataatgaatacaattgaacaaacgaaagccattagtgacgtgaacaacaccagttacaatcgaaagctcacatttacattcttttcataagcta |
119 |
Q |
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| T |
12185097 |
aaacagataatgaatacaattgaacaaacgaaagccataagtgacgtgaacagcaccagttacaatccaaagctcacatttacattcttttcataagcta |
12185196 |
T |
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| Q |
120 |
ttatagagagctgaagaacataagctgaaaccaacttatagagatgacataagcctaacaattgctta-aatattagaaaaagaaaaattgaccagaaat |
218 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||| ||| |||||| |
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| T |
12185197 |
ttattgagagctgaagaacataagctgaaaccaacttatagagatgacataagcctaacaattgcttataacattagaaaaagaaaaaccgactagaaat |
12185296 |
T |
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| Q |
219 |
tgaatcgatgagacatctaagtcatgattcaac |
251 |
Q |
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| T |
12185297 |
tgaatcgatgagacatctaagtcatgattcaac |
12185329 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 20 - 251
Target Start/End: Original strand, 12429525 - 12429757
Alignment:
| Q |
20 |
aaacagataatgaatacaattgaacaaacgaaagccattagtgacgtgaacaacaccagttacaatcgaaagctcacatttacattcttttcataagcta |
119 |
Q |
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| T |
12429525 |
aaacagataatgaatacaattgaacaaacgaaagccataagtgacgtgaacagcaccagttacaatccaaagctcacatttacattcttttcataagcta |
12429624 |
T |
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| Q |
120 |
ttatagagagctgaagaacataagctgaaaccaacttatagagatgacataagcctaacaattgctta-aatattagaaaaagaaaaattgaccagaaat |
218 |
Q |
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| T |
12429625 |
ttattgagagctgaagaacataagctgaaaccaacttatagagatgacataagcctaacaattgcttataacattagaaaaagaaaaaccgactagaaat |
12429724 |
T |
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| Q |
219 |
tgaatcgatgagacatctaagtcatgattcaac |
251 |
Q |
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| T |
12429725 |
tgaatcgatgagacatctaagtcatgattcaac |
12429757 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 17 - 109
Target Start/End: Original strand, 5554197 - 5554289
Alignment:
| Q |
17 |
tgcaaacagataatgaatacaattgaacaaacgaaagccattagtgacgtgaacaacaccagttacaatcgaaagctcacatttacattcttt |
109 |
Q |
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| T |
5554197 |
tgcaagcagataatggatgcagttgaacaaataaaagtcattactgacgtgaacaacaccagttacgatccaaagcttacgtttacattcttt |
5554289 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 17 - 109
Target Start/End: Complemental strand, 5604650 - 5604558
Alignment:
| Q |
17 |
tgcaaacagataatgaatacaattgaacaaacgaaagccattagtgacgtgaacaacaccagttacaatcgaaagctcacatttacattcttt |
109 |
Q |
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| T |
5604650 |
tgcaagcagataatggatgcagttgaacaaacaaaagccattagtgatgggaacagcacgagttacactccaaagcttacatttacattcttt |
5604558 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 17 - 109
Target Start/End: Original strand, 5630720 - 5630812
Alignment:
| Q |
17 |
tgcaaacagataatgaatacaattgaacaaacgaaagccattagtgacgtgaacaacaccagttacaatcgaaagctcacatttacattcttt |
109 |
Q |
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| T |
5630720 |
tgcaagcagataatggatgcagttgaacaaacaaaagccattagtgatgggaacagcacgagttacactccaaagcttacatttacattcttt |
5630812 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 17 - 109
Target Start/End: Original strand, 5648213 - 5648305
Alignment:
| Q |
17 |
tgcaaacagataatgaatacaattgaacaaacgaaagccattagtgacgtgaacaacaccagttacaatcgaaagctcacatttacattcttt |
109 |
Q |
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| T |
5648213 |
tgcaagcagataatggatacagtccaacaaacaaaagccattactgacgcgaatagcaccatttacaattcaaagcttacatttacattcttt |
5648305 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 65 - 109
Target Start/End: Original strand, 13167973 - 13168017
Alignment:
| Q |
65 |
gtgaacaacaccagttacaatcgaaagctcacatttacattcttt |
109 |
Q |
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| T |
13167973 |
gtgaacaacactagttacaatccaaagcttacatttagattcttt |
13168017 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 107 - 158
Target Start/End: Complemental strand, 10199469 - 10199418
Alignment:
| Q |
107 |
ttttcataagctattatagagagctgaagaacataagctgaaaccaacttat |
158 |
Q |
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| T |
10199469 |
ttttcataagctattttagagagcttatgaaaataagctgaaaacaacttat |
10199418 |
T |
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