View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3218_high_29 (Length: 250)
Name: NF3218_high_29
Description: NF3218
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3218_high_29 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 197; Significance: 1e-107; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 1 - 238
Target Start/End: Complemental strand, 31661969 - 31661729
Alignment:
| Q |
1 |
acatacatagggaaggcaaattggctgcagattgctatggccaaaatttagctatgtttccgttgatacatagggaaagttt-catttactatgactgtt |
99 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
31661969 |
acatacatagggaaggcaaattggctgcagattgctatggccaaaatttagctatgtttccgttgatacatagggaaagttttcatttactatgactgtt |
31661870 |
T |
|
| Q |
100 |
aatttgtaatgtgtcctctttgttaagggttcaggccctatcctgattctttagtgcttttcttgcttgat--cnnnnnnngtatcttatcatgtgcatg |
197 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
31661869 |
aatttgtaatgtgtcctctttgttaagggttcaggccctatcctgattctttagtgcttttcttgcttgataaaaaaaaaagtatcttatcatgtgcatg |
31661770 |
T |
|
| Q |
198 |
caatctatatatgttcctcaattcatttttatacatgcctt |
238 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31661769 |
caatctatatatgttcctcaattcatttttatacatgcctt |
31661729 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 1 - 238
Target Start/End: Complemental strand, 31683438 - 31683195
Alignment:
| Q |
1 |
acatacatagggaaggcaaattggctgcagattgctatggccaaaatttagctatgtttccgttgatacatagggaaag-tttcatttactatga-ct-g |
97 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||| || | |
|
|
| T |
31683438 |
acatacatagggaaggcaaattggctgcagattgctatggccaaaatttagctatgtttccgttgatccatagggaaagttttcatttactatgatctag |
31683339 |
T |
|
| Q |
98 |
tt--aatttgtaatgtgtcctctttgttaagggttcaggccctatcctgattctttagtgcttttcttgcttgatc-nnnnnnngtatcttatcatgtgc |
194 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
31683338 |
tttctgtttgtaatgtgtcctctttgttaagggttcaggccctatcctgattcattagtgcttttcttgcttgatcaaaaaaaagtatcttatcatgtgc |
31683239 |
T |
|
| Q |
195 |
atgcaatctatatatgttcctcaattcatttttatacatgcctt |
238 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
31683238 |
atgcaatctatacatgttcctcaattcatttttatacatgcctt |
31683195 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 1 - 166
Target Start/End: Original strand, 11980669 - 11980839
Alignment:
| Q |
1 |
acatacatagggaaggcaaattggctgcagattgctatggccaaaatttagctatgtttccgttgatacatagggaaag-tttcatttactatg----ac |
95 |
Q |
| |
|
||||||||| ||||||||| |||||||||||||||| |||||||||||||||||||||||| |||||| ||||||| || ||||||||||| || | |
|
|
| T |
11980669 |
acatacataaggaaggcaacttggctgcagattgctttggccaaaatttagctatgtttccattgataaatagggatagttttcatttactgtgctctag |
11980768 |
T |
|
| Q |
96 |
tgttaatttgtaatgtgtcctctttgttaagggttcaggccctatcctgattctttagtgcttttcttgct |
166 |
Q |
| |
|
| | ||||||||||||| |||| || |||||||||| ||||| |||| ||||||||||||||||||||| |
|
|
| T |
11980769 |
tttctgtttgtaatgtgtcttcttggtcaagggttcagtccctaacctgcttctttagtgcttttcttgct |
11980839 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 1 - 170
Target Start/End: Complemental strand, 38171661 - 38171489
Alignment:
| Q |
1 |
acatacatagggaaggcaaattggctgcagattgctatggccaaaatttagctatgtttccgttgatacatagggaaagttt-catttactatg----ac |
95 |
Q |
| |
|
||||||||||||||||||| |||| || |||||||| || ||||| ||||||||||||||| ||| | |||||||| ||||| ||||| | ||| | |
|
|
| T |
38171661 |
acatacatagggaaggcaacttggttgtagattgctttgaccaaattttagctatgtttcctttgcttcatagggatagtttacatttcccatgctctag |
38171562 |
T |
|
| Q |
96 |
tgttaatttgtaatgtgtcctctttgttaagggttcaggccctatcctgattctttagtgcttttcttgcttgat |
170 |
Q |
| |
|
| || ||||||||||||||| |||||||||||||||||||||| |||| ||| ||| ||||||||||||||||| |
|
|
| T |
38171561 |
tatttgtttgtaatgtgtcct-tttgttaagggttcaggccctaacctgcttc-ttactgcttttcttgcttgat |
38171489 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 179 - 238
Target Start/End: Original strand, 32834780 - 32834839
Alignment:
| Q |
179 |
gtatcttatcatgtgcatgcaatctatatatgttcctcaattcatttttatacatgcctt |
238 |
Q |
| |
|
|||||||||||| |||||| ||||||| ||||||||| |||||||||||||||||||||| |
|
|
| T |
32834780 |
gtatcttatcatatgcatggaatctatgtatgttccttaattcatttttatacatgcctt |
32834839 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 179 - 238
Target Start/End: Original strand, 32841159 - 32841218
Alignment:
| Q |
179 |
gtatcttatcatgtgcatgcaatctatatatgttcctcaattcatttttatacatgcctt |
238 |
Q |
| |
|
||||||||| | ||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
32841159 |
gtatcttattgtatgcatgcaatctatatatgctcctcaattcatttttatacatgcctt |
32841218 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 57; Significance: 7e-24; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 2 - 138
Target Start/End: Complemental strand, 10302247 - 10302108
Alignment:
| Q |
2 |
catacatagggaaggcaaattggctgcagattgctatggccaaaatttagctatgtttccgttgatacatagggaaagttt-catttactatg--actgt |
98 |
Q |
| |
|
|||||||||||||||||| |||||||||||||| | | |||||||||||||||||||||| ||| | |||||||| ||||| ||||||| ||| | || |
|
|
| T |
10302247 |
catacatagggaaggcaacttggctgcagattgatttagccaaaatttagctatgtttcctttgcttcatagggatagtttacatttaccatgctccagt |
10302148 |
T |
|
| Q |
99 |
taatttgtaatgtgtcctctttgttaagggttcaggccct |
138 |
Q |
| |
|
||||||||||| ||| ||||||||||||||||||||| |
|
|
| T |
10302147 |
atgtttgtaatgtgccctttttgttaagggttcaggccct |
10302108 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University