View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3218_high_3 (Length: 542)
Name: NF3218_high_3
Description: NF3218
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3218_high_3 |
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Alignment Details
Target: chr1 (Bit Score: 481; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 481; E-Value: 0
Query Start/End: Original strand, 17 - 525
Target Start/End: Original strand, 35426849 - 35427356
Alignment:
| Q |
17 |
atgaacacaatctcaccagcagtgctttctgccgaaacaacaccaagctcattctttgcagttgtcagaaagtaagcccgtgcatttccaagggaaagct |
116 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35426849 |
atgaacacaatctcaccagcagtgctttctgccgaaacaacgccaagctcattctttgcagttgtcagaaagtaagcccgtgcatttccaagggaaagct |
35426948 |
T |
|
| Q |
117 |
gataaaaacagattgagtcaagttaaagtgttactcaagtagcaaccaattgacttgagggcaattgggttttgaaaacaacttattaaactcttaaagc |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35426949 |
gataaaaacagattgagtcaagttaaagtgttactcaagtagcaaccaattgacttgagggcaattgggttttgaaaacaacttattaaactcttaaagc |
35427048 |
T |
|
| Q |
217 |
agtaatagtaccacaagagctttaacaatgtcaccaggacgaaaagacaggtgcatgtctactttatcaatctcagttgccctaacatcttgttgcctgc |
316 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35427049 |
agtaatagtaccacaagagctttaacaatgtcaccaggacgaaaagacaagtgcatgtctactttatcaatctcagttgccctaacatcttgttgcctgc |
35427148 |
T |
|
| Q |
317 |
caaaataagaataatgaatactctagtattttaaaacagaaaacaggaataattattataattccaaatgacaaacacatgaaatttgtgatataaagat |
416 |
Q |
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| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
35427149 |
c-aaataagaataatgaatactctagtattttaaaacagaaaacaggaataattattataattccaaatgaaaaacacatgaaatttgtgatataaagat |
35427247 |
T |
|
| Q |
417 |
agtcatgcacagatagaggaaagtgagctcaagtgtttattcaaacagacaagatttaactgactgcattcctacaacccctttcttccctgttttcaat |
516 |
Q |
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||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35427248 |
agtcatgcacagatagaggaaagtgagctcaagtgtttaaccaaacagacaagatttaactgactgcattcctacaacccctttcttccctgttttcaat |
35427347 |
T |
|
| Q |
517 |
gtaattgct |
525 |
Q |
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||||||||| |
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| T |
35427348 |
gtaattgct |
35427356 |
T |
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