View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3218_high_34 (Length: 240)
Name: NF3218_high_34
Description: NF3218
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3218_high_34 |
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Alignment Details
Target: chr8 (Bit Score: 181; Significance: 6e-98; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 181; E-Value: 6e-98
Query Start/End: Original strand, 1 - 224
Target Start/End: Original strand, 12185484 - 12185708
Alignment:
| Q |
1 |
tattaatgtgttattgaaaaatttgaaaaagtgagaagcaattaatccaccatctatttt-aataacaagcaattttccctaacataccttaagtcttct |
99 |
Q |
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| T |
12185484 |
tattaatgtgttattgaaaaatttgaaaaagtgcgaagtaattaatccactatctatttttaataacaagcaattttccctaagataccttaagtcttct |
12185583 |
T |
|
| Q |
100 |
gtttctgctgcttccagattgggaagagttccatagacactttgctgaaaattcattgctggtgaaactgtttcttcttgctcatcagatctagaaccct |
199 |
Q |
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| T |
12185584 |
gtttctgctgtttccagattgggaagagttccatagacactttgctgaaaattcattgctggtggaactgtttcttcttgctcatcagatttagaaccct |
12185683 |
T |
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| Q |
200 |
ccattgtgtgagtttccctacttgt |
224 |
Q |
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||| ||||||||||||| ||||||| |
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| T |
12185684 |
ccactgtgtgagtttccttacttgt |
12185708 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 181; E-Value: 6e-98
Query Start/End: Original strand, 1 - 224
Target Start/End: Original strand, 12429912 - 12430136
Alignment:
| Q |
1 |
tattaatgtgttattgaaaaatttgaaaaagtgagaagcaattaatccaccatctatttt-aataacaagcaattttccctaacataccttaagtcttct |
99 |
Q |
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||||||||||||||||||||||||||||||||| |||| ||||||||||| ||||||||| |||||||||||||||||||||| |||||||||||||||| |
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| T |
12429912 |
tattaatgtgttattgaaaaatttgaaaaagtgcgaagtaattaatccactatctatttttaataacaagcaattttccctaagataccttaagtcttct |
12430011 |
T |
|
| Q |
100 |
gtttctgctgcttccagattgggaagagttccatagacactttgctgaaaattcattgctggtgaaactgtttcttcttgctcatcagatctagaaccct |
199 |
Q |
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| T |
12430012 |
gtttctgctgtttccagattgggaagagttccatagacactttgctgaaaattcattgctggtggaactgtttcttcttgctcatcagatttagaaccct |
12430111 |
T |
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| Q |
200 |
ccattgtgtgagtttccctacttgt |
224 |
Q |
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||| ||||||||||||| ||||||| |
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| T |
12430112 |
ccactgtgtgagtttccttacttgt |
12430136 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 59 - 224
Target Start/End: Original strand, 12174030 - 12174196
Alignment:
| Q |
59 |
ttaataacaagcaattttccctaaca----taccttaagtcttctgtttctgctgcttccagattgggaagagttccatagacactttgctgaaaattca |
154 |
Q |
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|||||| ||||||||||||||||| | ||||||||||||| ||||||| ||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
12174030 |
ttaatatcaagcaattttccctaagaatattaccttaagtcttttgtttctactgcttccagattggga---gttccatagacactttgctgaaaattca |
12174126 |
T |
|
| Q |
155 |
ttgctggtgaaactgtttcttcttgctcatcagatctagaaccctccattgtgtgagtttccctacttgt |
224 |
Q |
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| T |
12174127 |
ttgctggtggaactgtttcttcttgctcatcagattcagaaccctccactgtgtgagtttccttacttgt |
12174196 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 59 - 224
Target Start/End: Original strand, 12418458 - 12418624
Alignment:
| Q |
59 |
ttaataacaagcaattttccctaaca----taccttaagtcttctgtttctgctgcttccagattgggaagagttccatagacactttgctgaaaattca |
154 |
Q |
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|||||| ||||||||||||||||| | ||||||||||||| ||||||| ||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
12418458 |
ttaatatcaagcaattttccctaagaatattaccttaagtcttttgtttctactgcttccagattggga---gttccatagacactttgctgaaaattca |
12418554 |
T |
|
| Q |
155 |
ttgctggtgaaactgtttcttcttgctcatcagatctagaaccctccattgtgtgagtttccctacttgt |
224 |
Q |
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| T |
12418555 |
ttgctggtggaactgtttcttcttgctcatcagattcagaaccctccactgtgtgagtttccttacttgt |
12418624 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 47; Significance: 6e-18; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 90 - 171
Target Start/End: Complemental strand, 4272103 - 4272021
Alignment:
| Q |
90 |
taagtcttctgtttctgctgctt-ccagattgggaagagttccatagacactttgctgaaaattcattgctggtgaaactgtt |
171 |
Q |
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|||||||| || |||| |||||| ||||||||| |||||||||||||||||||||||||||| |||||| ||||| ||||||| |
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| T |
4272103 |
taagtcttttgcttctactgctttccagattggaaagagttccatagacactttgctgaaaaatcattgttggtggaactgtt |
4272021 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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