View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3218_high_36 (Length: 238)
Name: NF3218_high_36
Description: NF3218
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3218_high_36 |
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Alignment Details
Target: chr5 (Bit Score: 195; Significance: 1e-106; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 1 - 227
Target Start/End: Complemental strand, 27217426 - 27217200
Alignment:
| Q |
1 |
gggaagattatttgcaagctgaagagttggaacgtgatttggttatccatcagatggagtcgaagaaatctcagcaagagaacgcacaagcgaccaaaag |
100 |
Q |
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| T |
27217426 |
gggaggattgtttgcgagctgaagagttggaatgtgatttggttattcatcagatggagtcgaagaaatctcagcaagagaacgcacaagcgaccaaaag |
27217327 |
T |
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| Q |
101 |
agcaaagcctatggtatgaattcaatattatatatcatatgataatagttgtagtaaaggtgtgtctagtatctgacatgtttctatacatgacgcttat |
200 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||| |
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| T |
27217326 |
agcaaagcctgtggtatgaattcaatattatatatcatatgataatagttgtagtaaaggcgtgtctagtatctgacatgtttctagacatgacgcttat |
27217227 |
T |
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| Q |
201 |
gcgtgtggttattacttttagcttcat |
227 |
Q |
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||||||||||||||||||||||||||| |
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| T |
27217226 |
gcgtgtggttattacttttagcttcat |
27217200 |
T |
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