View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3218_high_45 (Length: 203)
Name: NF3218_high_45
Description: NF3218
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3218_high_45 |
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Alignment Details
Target: chr7 (Bit Score: 135; Significance: 1e-70; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 135; E-Value: 1e-70
Query Start/End: Original strand, 13 - 187
Target Start/End: Original strand, 41896814 - 41896979
Alignment:
| Q |
13 |
gagaagaaatccgttaaggttcataataagcaatttcttcttaggtccgagattcagcttctcaagagaaaggtccaattctggacttttgtgatcatca |
112 |
Q |
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| T |
41896814 |
gagaagaaatccattaaggttcataataagcaatttcttcttaggtccgagattcagcttctcaagaaaaaggtccaattctggacttttgtga------ |
41896907 |
T |
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| Q |
113 |
tggtcatcatgatcagcttcagagtctttgattttgatatttccatcactgcaactctctttctttgcttccatt |
187 |
Q |
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| T |
41896908 |
---tcatcatgatcagcttcagagtctttgattttgatatttccatcactgcaactctctttctttgcttccatt |
41896979 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 13 - 187
Target Start/End: Original strand, 41893638 - 41893821
Alignment:
| Q |
13 |
gagaagaaatccgttaaggttcataataagcaatttcttcttaggtccgagattcagcttctcaagagaaaggtccaa---------ttctggacttttg |
103 |
Q |
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| T |
41893638 |
gagaagaaatccattaatgttcataatgagcaatttcttcttaggactatgattcagtttctcaagagaaagacccaactctagttcttctgaacatttg |
41893737 |
T |
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| Q |
104 |
tgatcatcatggtcatcatgatcagcttcagagtctttgattttgatatttccatcactgcaactctctttctttgcttccatt |
187 |
Q |
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| T |
41893738 |
tgatcatcaaggtcaacatgattagcttcagagtctttgattttgatatttccgtcactgcaactctttttctttgcgtccatt |
41893821 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 47 - 187
Target Start/End: Complemental strand, 41828838 - 41828701
Alignment:
| Q |
47 |
ttcttcttaggtccgagattcagcttctcaagagaaaggtccaattctggacttttgtgatcatcatggtcatcatgatcagcttcagagtctttgattt |
146 |
Q |
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| T |
41828838 |
ttcttctttggtgcaagattcagcttctcaagagaaagactcaattcttg---tttgtgatcatcatggtcaacatgatcagcttcaaagtctttgattc |
41828742 |
T |
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| Q |
147 |
tgatatttccatcactgcaactctctttctttgcttccatt |
187 |
Q |
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| T |
41828741 |
tgatatttccatcactgcaactttccttctttgcttccatt |
41828701 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 77; E-Value: 6e-36
Query Start/End: Original strand, 13 - 187
Target Start/End: Original strand, 41901855 - 41902030
Alignment:
| Q |
13 |
gagaagaaatccgttaaggttcataataagcaatttcttcttaggtccgagattcagcttctcaagagaaaggtccaattctggacttttgtgatc-atc |
111 |
Q |
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| T |
41901855 |
gagaagaaatccgttaaggttcataattagcaatttcttcttaggtccgagattaagtttctcaagagaaagaccaaattctgg-ttcttctgaactttt |
41901953 |
T |
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| Q |
112 |
atggtcatcatgatcagcttc-agagtctttgattttgatatttccatcactgcaactctctttctttgcttccatt |
187 |
Q |
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| T |
41901954 |
gtgatcatcatgatcagcttcaagagtctttgattttgatatttccatcactggaactcttcttctttacgtccatt |
41902030 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 71; E-Value: 2e-32
Query Start/End: Original strand, 47 - 187
Target Start/End: Original strand, 41885886 - 41886022
Alignment:
| Q |
47 |
ttcttcttaggtccgagattcagcttctcaagagaaaggtccaattctggacttttgtgatcatcatggtcatcatgatcagcttcagagtctttgattt |
146 |
Q |
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| T |
41885886 |
ttcttctttggtgcaagattcagcttctcaagagaaagactcaattcttg---tttgtgatcatcatggtcaata-gatcagcttcagagtctttgattc |
41885981 |
T |
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| Q |
147 |
tgatatttccatcactgcaactctctttctttgcttccatt |
187 |
Q |
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| T |
41885982 |
tgatatttccatcactgcaactttccttctttgcttccatt |
41886022 |
T |
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