View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3218_high_8 (Length: 434)
Name: NF3218_high_8
Description: NF3218
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3218_high_8 |
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Alignment Details
Target: chr5 (Bit Score: 320; Significance: 1e-180; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 320; E-Value: 1e-180
Query Start/End: Original strand, 1 - 416
Target Start/End: Original strand, 17191555 - 17191970
Alignment:
| Q |
1 |
acttgaagcatgcaagtggtaatatcgtgagaaatgtaccttcatcttcaaatgattaaaactacataattagttgaattaaactaaatgattcattttt |
100 |
Q |
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| T |
17191555 |
acttgaagcacgcaagtggtaatatcgtgagaaatgtaccttcatcttcaaatgattaaaactacataattagttgaatgaatctaaatgattcattttt |
17191654 |
T |
|
| Q |
101 |
gcttatattagtgactgaatgatgtatttaatattagggtgagttcacgaacattaggtgagtcaccctacttttgcaaaaccaatatattgtagcatat |
200 |
Q |
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| T |
17191655 |
acttatattagtgatcgaattatgtatttaatattagggtgagttcaagaacattaggtgagtcaccctaattttgcaaatccaatacagtgtagcatat |
17191754 |
T |
|
| Q |
201 |
ccaaaattactctgaatcatcgtgattctcgtaaatccattgttaagattttatgcatttttatgagtaaaaaatagcaaaaacaatttattttatttga |
300 |
Q |
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| T |
17191755 |
gcaaaattactctcaatcatcgtgattctggtaaattcattgttaagattttatgcatttttacaagtaaaaaatagcaaaatcaaattattttatttga |
17191854 |
T |
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| Q |
301 |
tatatcactttagaatatcaaccaagtattaatattgagttttaaacttttctcctaaccatttgttaatctctcttttcgtttttgcatgttacttata |
400 |
Q |
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| T |
17191855 |
tatatcactttagaatatcaacgaagtattaatattgagttttaaactcttctcctaactatttgttaatctctcttttcgtctttgcatgttacttata |
17191954 |
T |
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| Q |
401 |
aatgaggttagtacat |
416 |
Q |
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| T |
17191955 |
aatgaggttagtacat |
17191970 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 94 - 127
Target Start/End: Complemental strand, 23885597 - 23885564
Alignment:
| Q |
94 |
catttttgcttatattagtgactgaatgatgtat |
127 |
Q |
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| T |
23885597 |
catttttgcttataatagtgactgaatgatgtat |
23885564 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000006; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 95 - 127
Target Start/End: Original strand, 25774296 - 25774328
Alignment:
| Q |
95 |
atttttgcttatattagtgactgaatgatgtat |
127 |
Q |
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| T |
25774296 |
atttttgcttataatagtgactgaatgatgtat |
25774328 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 96 - 128
Target Start/End: Complemental strand, 44182547 - 44182515
Alignment:
| Q |
96 |
tttttgcttatattagtgactgaatgatgtatt |
128 |
Q |
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| T |
44182547 |
tttttgcttataatagtgactgaatgatgtatt |
44182515 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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