View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3218_high_9 (Length: 431)
Name: NF3218_high_9
Description: NF3218
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3218_high_9 |
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Alignment Details
Target: chr7 (Bit Score: 325; Significance: 0; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 325; E-Value: 0
Query Start/End: Original strand, 17 - 413
Target Start/End: Complemental strand, 47807953 - 47807557
Alignment:
| Q |
17 |
atgaacaagtaaagagccaagaatgaatacatgttttgttatatcctcgtgaagacttgtagccttctcttgaaaatccacctgccaatgcagacaggga |
116 |
Q |
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| T |
47807953 |
atgaacaagtaaagagccaagaatgaatacatgttttgttatatcctcgtgaagacttgtagccttctcttgaaaatccacctgccaatgcagacaggga |
47807854 |
T |
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| Q |
117 |
aacaaagtagttcaaattttccgctatatatttaagtnnnnnnnnnnnnnnnncaattcaaaatgtcacgatagtcgccgaatgacaacttaaaacaatg |
216 |
Q |
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| T |
47807853 |
aacaaagtagttcaaattttccgctatatatttaagtaaaaataaaataaaaacaattcaacgtgtcacgatagtcgccgaatgacaacttaaaacaatg |
47807754 |
T |
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| Q |
217 |
acacggttttactgtcaaactgctacaagaataagtagtaagaatgttattttggatcacactaattttcactattttcaattgctgtttcagataatcg |
316 |
Q |
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| T |
47807753 |
acacggttttactgtcaaactgctacaagaataagtagtaagaatgttattttggatcacactaattttcactattttcaattgctgtttcagataagcg |
47807654 |
T |
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| Q |
317 |
tccttcgaaagctaaaacattttttcttcatgtatcatacaacttacaacagttattttcggtaacaagccagtgttcactttttgccgcaaatcct |
413 |
Q |
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| T |
47807653 |
tccttcgaaagctaaaacattttttctacatgtatcatacaacttacaacagttattttcggaaacaagccagtattcactttttgccgcaaatcct |
47807557 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 29 - 149
Target Start/End: Complemental strand, 47805204 - 47805085
Alignment:
| Q |
29 |
agagccaagaatgaatacatgttttgttatatcctcgtgaagacttgtagccttctcttgaaaatccacctgccaatgcagacagggaaacaaagtagtt |
128 |
Q |
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|||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||| ||| ||||||| |||||||| |||| |||| |
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| T |
47805204 |
agagtcaagaatgaatacatgtttcgttatatcctcgtgaagacttgtagccttctcttgaagatcctccttccaatgccagcagggaaa-aaagaagtt |
47805106 |
T |
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| Q |
129 |
caaattttccgctatatattt |
149 |
Q |
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|||| |||||||||||||| |
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| T |
47805105 |
aaaatcatccgctatatattt |
47805085 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 346 - 413
Target Start/End: Complemental strand, 47805063 - 47804996
Alignment:
| Q |
346 |
atgtatcatacaacttacaacagttattttcggtaacaagccagtgttcactttttgccgcaaatcct |
413 |
Q |
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| T |
47805063 |
atgtatcatacaacttacaacagttaattttgggagcaatccagttttcacttttttccgtaaatcct |
47804996 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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