View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3218_low_1 (Length: 677)

Name: NF3218_low_1
Description: NF3218
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3218_low_1
NF3218_low_1
[»] chr1 (3 HSPs)
chr1 (58-354)||(31803857-31804155)
chr1 (565-667)||(31801461-31801563)
chr1 (423-492)||(31801562-31801631)
[»] chr4 (2 HSPs)
chr4 (104-139)||(47457969-47458004)
chr4 (245-301)||(44719357-44719413)
[»] chr2 (1 HSPs)
chr2 (243-302)||(35755239-35755298)
[»] chr5 (4 HSPs)
chr5 (105-139)||(26521585-26521619)
chr5 (245-302)||(26884685-26884742)
chr5 (248-301)||(30639298-30639351)
chr5 (251-284)||(40234112-40234145)
[»] chr7 (1 HSPs)
chr7 (245-302)||(22349849-22349906)
[»] chr6 (1 HSPs)
chr6 (245-302)||(10098892-10098949)
[»] scaffold0006 (1 HSPs)
scaffold0006 (245-277)||(163190-163222)
[»] chr8 (1 HSPs)
chr8 (246-302)||(37077978-37078034)


Alignment Details
Target: chr1 (Bit Score: 231; Significance: 1e-127; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 58 - 354
Target Start/End: Complemental strand, 31804155 - 31803857
Alignment:
Q  58 catacataataattagaaattgaactctga-tcatacttaagatgtccaaatctcttaccacttgaaccaattcattgttggtataactcaaccttctta 156  Q
    ||||| ||||| |||||||||||||||| | ||||| |||||| || ||||||||||| |||||||||||||| | ||||||||||||||||||||||||    
T  31804155 catacgtaatagttagaaattgaactcttaatcatatttaagaagttcaaatctcttatcacttgaaccaatttactgttggtataactcaaccttctta 31804056  T
Q  157 gacggggtgcattctctttttattgcttaaatataacatcgaatgaagtatgcctt-aagactaatattttatgcacgtgagtatagtaaacaataacaa 255  Q
    ||||||||||||||||||||| |||||||||||||| ||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||    
T  31804055 gacggggtgcattctctttttgttgcttaaatataagatcgaatgaagtatgcctttaagactaatattttatgcacgcgagtatagtaaacaataacaa 31803956  T
Q  256 caatcaagttttattccactaagtatggtcgactgcatggatcaaatcataatgttcggggcattagttttattccactaagtattttccactaatatt 354  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  31803955 caatcaagttttattccactaagtatggtcgactgcatggatcaaatcataacgttcggggcattagttttattccactaagtattttccactaatatt 31803857  T

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Target: chr1; HSP #2
Raw Score: 95; E-Value: 4e-46
Query Start/End: Original strand, 565 - 667
Target Start/End: Complemental strand, 31801563 - 31801461
Alignment:
Q  565 aaaccagtaattagggtttgtgattgcgaggacccaacaagcaacaatcaggaatcaaaattccaatcaagaaagaagaacagagcctctgtctgtctct 664  Q
    ||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31801563 aaaccagtaattagggtttgtgattggcaggacccaacaagcaacaatcaggaatcaaaattccaatcaagaaagaagaacagagcctctgtctgtctct 31801464  T
Q  665 gct 667  Q
    |||    
T  31801463 gct 31801461  T

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Target: chr1; HSP #3
Raw Score: 66; E-Value: 8e-29
Query Start/End: Original strand, 423 - 492
Target Start/End: Complemental strand, 31801631 - 31801562
Alignment:
Q  423 atataaaatgcataaaaataaaaatgcgggcaaggttattctgggcattatgatgaaatatttgggtgaa 492  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  31801631 atataaaatgcataaaaataaaaatgcgggcaaggttattctgggcattatgatgaaatattttggtgaa 31801562  T

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Target: chr4 (Bit Score: 32; Significance: 0.00000002; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 104 - 139
Target Start/End: Original strand, 47457969 - 47458004
Alignment:
Q  104 caaatctcttaccacttgaaccaattcattgttggt 139  Q
    ||||||||||||||||||||| ||||||||||||||    
T  47457969 caaatctcttaccacttgaacgaattcattgttggt 47458004  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 245 - 301
Target Start/End: Original strand, 44719357 - 44719413
Alignment:
Q  245 aacaataacaacaatcaagttttattccactaagtatggtcgactgcatggatcaaa 301  Q
    ||||| |||||||| ||||| |||| |||||||||| ||||| || |||||||||||    
T  44719357 aacaacaacaacaaccaagtcttatcccactaagtagggtcggctacatggatcaaa 44719413  T

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Target: chr2 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 243 - 302
Target Start/End: Original strand, 35755239 - 35755298
Alignment:
Q  243 taaacaataacaacaatcaagttttattccactaagtatggtcgactgcatggatcaaat 302  Q
    ||||||| |||||||| ||||  |||| |||||||||| ||||| |||||||||||||||    
T  35755239 taaacaagaacaacaaccaagccttatcccactaagtagggtcggctgcatggatcaaat 35755298  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000006; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 105 - 139
Target Start/End: Original strand, 26521585 - 26521619
Alignment:
Q  105 aaatctcttaccacttgaaccaattcattgttggt 139  Q
    ||||||||||||||||||||||||||||| |||||    
T  26521585 aaatctcttaccacttgaaccaattcatttttggt 26521619  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 245 - 302
Target Start/End: Original strand, 26884685 - 26884742
Alignment:
Q  245 aacaataacaacaatcaagttttattccactaagtatggtcgactgcatggatcaaat 302  Q
    ||||| |||||||||||||  ||||||||||||||  ||||| || ||||||||||||    
T  26884685 aacaacaacaacaatcaagccttattccactaagtggggtcggctacatggatcaaat 26884742  T

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Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 248 - 301
Target Start/End: Original strand, 30639298 - 30639351
Alignment:
Q  248 aataacaacaatcaagttttattccactaagtatggtcgactgcatggatcaaa 301  Q
    ||||||||||| ||||| |||| |||||||||| ||| |||| |||||||||||    
T  30639298 aataacaacaaccaagtcttatcccactaagtagggttgactacatggatcaaa 30639351  T

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Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 251 - 284
Target Start/End: Complemental strand, 40234145 - 40234112
Alignment:
Q  251 aacaacaatcaagttttattccactaagtatggt 284  Q
    ||||||||| ||||||||||||||||||||||||    
T  40234145 aacaacaatgaagttttattccactaagtatggt 40234112  T

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Target: chr7 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 245 - 302
Target Start/End: Complemental strand, 22349906 - 22349849
Alignment:
Q  245 aacaataacaacaatcaagttttattccactaagtatggtcgactgcatggatcaaat 302  Q
    ||||| |||||||||||||  |||| |||||||||  |||||||| ||||||||||||    
T  22349906 aacaacaacaacaatcaagccttatcccactaagtggggtcgactacatggatcaaat 22349849  T

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Target: chr6 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 245 - 302
Target Start/End: Original strand, 10098892 - 10098949
Alignment:
Q  245 aacaataacaacaatcaagttttattccactaagtatggtcgactgcatggatcaaat 302  Q
    ||||| |||||||||||||| |||| |||||||||  |||||| | ||||||||||||    
T  10098892 aacaacaacaacaatcaagtcttatcccactaagtggggtcgattacatggatcaaat 10098949  T

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Target: scaffold0006 (Bit Score: 29; Significance: 0.000001; HSPs: 1)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 245 - 277
Target Start/End: Original strand, 163190 - 163222
Alignment:
Q  245 aacaataacaacaatcaagttttattccactaa 277  Q
    ||||| |||||||||||||||||||||||||||    
T  163190 aacaacaacaacaatcaagttttattccactaa 163222  T

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Target: chr8 (Bit Score: 29; Significance: 0.000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 246 - 302
Target Start/End: Complemental strand, 37078034 - 37077978
Alignment:
Q  246 acaataacaacaatcaagttttattccactaagtatggtcgactgcatggatcaaat 302  Q
    |||| |||||||| |||||||||| ||| |||||  ||||| |||||||||||||||    
T  37078034 acaacaacaacaaccaagttttatcccattaagtggggtcggctgcatggatcaaat 37077978  T

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