View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3218_low_12 (Length: 356)

Name: NF3218_low_12
Description: NF3218
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3218_low_12
NF3218_low_12
[»] chr4 (19 HSPs)
chr4 (179-342)||(26724008-26724171)
chr4 (179-242)||(53143264-53143327)
chr4 (188-244)||(37340614-37340669)
chr4 (179-242)||(12090461-12090524)
chr4 (179-242)||(30824924-30824987)
chr4 (179-242)||(37651830-37651893)
chr4 (179-242)||(52434788-52434851)
chr4 (179-216)||(16904954-16904991)
chr4 (179-216)||(18209701-18209738)
chr4 (179-216)||(31965971-31966008)
chr4 (179-216)||(33139473-33139510)
chr4 (179-216)||(37590806-37590843)
chr4 (179-216)||(46256224-46256261)
chr4 (179-242)||(16917890-16917953)
chr4 (175-216)||(45976988-45977029)
chr4 (179-216)||(47142802-47142839)
chr4 (179-216)||(48118536-48118573)
chr4 (188-216)||(11238183-11238211)
chr4 (188-216)||(44376090-44376118)
[»] chr2 (16 HSPs)
chr2 (179-323)||(2988803-2988948)
chr2 (179-307)||(25889041-25889167)
chr2 (179-242)||(6120716-6120779)
chr2 (179-242)||(18351715-18351778)
chr2 (179-242)||(27944798-27944861)
chr2 (179-242)||(41664674-41664737)
chr2 (179-242)||(44902245-44902308)
chr2 (179-216)||(8700451-8700488)
chr2 (179-216)||(19596365-19596402)
chr2 (179-216)||(20545015-20545052)
chr2 (179-219)||(22139563-22139603)
chr2 (177-216)||(31424199-31424238)
chr2 (179-242)||(41663401-41663464)
chr2 (179-242)||(42442128-42442191)
chr2 (175-216)||(26231257-26231298)
chr2 (188-241)||(31572446-31572499)
[»] chr1 (21 HSPs)
chr1 (179-331)||(45115430-45115583)
chr1 (179-242)||(1231960-1232023)
chr1 (175-242)||(50326165-50326232)
chr1 (179-237)||(2951368-2951426)
chr1 (181-249)||(36465852-36465920)
chr1 (179-242)||(4266545-4266608)
chr1 (179-242)||(29942182-29942245)
chr1 (179-242)||(31018202-31018265)
chr1 (179-242)||(34888688-34888751)
chr1 (179-242)||(38913749-38913812)
chr1 (179-216)||(9216221-9216258)
chr1 (179-216)||(18855235-18855272)
chr1 (179-213)||(26497649-26497683)
chr1 (179-216)||(2590470-2590507)
chr1 (179-216)||(18706511-18706548)
chr1 (179-216)||(23482709-23482746)
chr1 (188-245)||(28947465-28947522)
chr1 (179-216)||(52687116-52687153)
chr1 (179-216)||(52957066-52957103)
chr1 (184-212)||(21981219-21981247)
chr1 (182-242)||(35614231-35614291)
[»] chr7 (20 HSPs)
chr7 (13-131)||(46346919-46347041)
chr7 (179-242)||(31373620-31373683)
chr7 (179-237)||(21341992-21342050)
chr7 (172-242)||(42242149-42242219)
chr7 (179-242)||(21804574-21804637)
chr7 (179-242)||(33916949-33917012)
chr7 (179-242)||(38163341-38163404)
chr7 (179-216)||(13786360-13786397)
chr7 (179-216)||(16376547-16376584)
chr7 (179-216)||(40969081-40969118)
chr7 (179-242)||(3840643-3840706)
chr7 (179-242)||(17178239-17178302)
chr7 (179-214)||(27903419-27903454)
chr7 (176-214)||(36608734-36608772)
chr7 (179-216)||(21670171-21670208)
chr7 (179-216)||(27138530-27138567)
chr7 (188-241)||(31097877-31097930)
chr7 (175-216)||(43933542-43933583)
chr7 (182-246)||(21314164-21314228)
chr7 (189-245)||(32661030-32661086)
[»] chr3 (19 HSPs)
chr3 (179-244)||(5189789-5189854)
chr3 (179-242)||(21098468-21098531)
chr3 (179-242)||(1941722-1941785)
chr3 (179-242)||(3898586-3898649)
chr3 (179-242)||(12264364-12264427)
chr3 (179-242)||(34121519-34121582)
chr3 (179-242)||(38653929-38653992)
chr3 (179-242)||(40014655-40014718)
chr3 (179-242)||(43363613-43363676)
chr3 (179-242)||(49672726-49672789)
chr3 (179-216)||(4584436-4584473)
chr3 (179-216)||(6460170-6460207)
chr3 (179-216)||(26948988-26949025)
chr3 (179-216)||(36076456-36076493)
chr3 (173-242)||(49506345-49506414)
chr3 (179-214)||(54073222-54073257)
chr3 (188-245)||(37099705-37099762)
chr3 (179-219)||(46921426-46921466)
chr3 (188-216)||(53556922-53556950)
[»] chr6 (19 HSPs)
chr6 (179-242)||(28099599-28099662)
chr6 (177-219)||(25342637-25342679)
chr6 (179-244)||(30142982-30143047)
chr6 (179-242)||(2266940-2267003)
chr6 (179-242)||(12597267-12597330)
chr6 (179-242)||(19997829-19997892)
chr6 (179-242)||(33646106-33646169)
chr6 (179-216)||(162671-162708)
chr6 (179-216)||(3593083-3593120)
chr6 (179-216)||(8539743-8539780)
chr6 (188-245)||(8657075-8657132)
chr6 (179-219)||(2965461-2965501)
chr6 (179-225)||(14986393-14986439)
chr6 (179-216)||(1405565-1405602)
chr6 (179-216)||(6300711-6300748)
chr6 (179-216)||(6307521-6307558)
chr6 (179-216)||(13533957-13533994)
chr6 (179-216)||(15044912-15044949)
chr6 (179-216)||(24165093-24165130)
[»] chr8 (19 HSPs)
chr8 (188-245)||(405365-405422)
chr8 (174-242)||(32110858-32110926)
chr8 (179-242)||(995817-995880)
chr8 (179-242)||(6299022-6299085)
chr8 (179-242)||(10478101-10478164)
chr8 (179-242)||(15961296-15961359)
chr8 (179-242)||(18175545-18175608)
chr8 (179-242)||(30473886-30473949)
chr8 (179-216)||(23353624-23353661)
chr8 (179-242)||(18997864-18997927)
chr8 (179-242)||(44832188-44832251)
chr8 (178-216)||(18569055-18569093)
chr8 (179-216)||(11725380-11725417)
chr8 (179-216)||(18842094-18842131)
chr8 (179-216)||(19241016-19241053)
chr8 (179-216)||(19314200-19314237)
chr8 (179-216)||(28583045-28583082)
chr8 (179-216)||(34815246-34815283)
chr8 (179-216)||(39997881-39997918)
[»] scaffold0836 (1 HSPs)
scaffold0836 (179-242)||(5280-5343)
[»] scaffold0031 (1 HSPs)
scaffold0031 (179-242)||(46438-46501)
[»] chr5 (16 HSPs)
chr5 (179-242)||(2398944-2399007)
chr5 (179-242)||(10729444-10729507)
chr5 (179-242)||(16526308-16526371)
chr5 (179-242)||(20874852-20874915)
chr5 (179-242)||(34107340-34107403)
chr5 (179-242)||(34110816-34110879)
chr5 (179-242)||(38246867-38246930)
chr5 (179-242)||(40177205-40177268)
chr5 (179-228)||(19391246-19391295)
chr5 (179-216)||(20655051-20655088)
chr5 (179-214)||(17373163-17373198)
chr5 (182-216)||(33375954-33375988)
chr5 (188-221)||(1396174-1396207)
chr5 (188-245)||(30096287-30096344)
chr5 (188-216)||(25099247-25099275)
chr5 (188-216)||(25158337-25158365)
[»] scaffold0896 (1 HSPs)
scaffold0896 (188-245)||(1078-1135)
[»] scaffold0022 (1 HSPs)
scaffold0022 (179-214)||(149052-149087)
[»] scaffold0515 (1 HSPs)
scaffold0515 (179-216)||(6063-6100)
[»] scaffold0306 (1 HSPs)
scaffold0306 (179-216)||(6073-6110)


Alignment Details
Target: chr4 (Bit Score: 144; Significance: 1e-75; HSPs: 19)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 179 - 342
Target Start/End: Complemental strand, 26724171 - 26724008
Alignment:
Q  179 tagacttttcacccgtgctgccgcacgggtcatatacaatgcaaaaataatagacaaaagcaaaattatatcgcacggtcgcaactcaatattaaaatat 278  Q
    |||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||| |    
T  26724171 tagacttttcacccgtgctgccgcacgggttatatacaatgcaaaaacaatagacaaaagcaaaattatatcgcacagtcgcaactcaatattaaaatgt 26724072  T
Q  279 tgtaactttaaagacaacaataatttaagagaatgttgttagtatacctcgtatatgtcaatgc 342  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  26724071 tgtaactttaaagacaacaataaattaagagaatgttgttagtatacctcgtatatgtcaatgc 26724008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 179 - 242
Target Start/End: Original strand, 53143264 - 53143327
Alignment:
Q  179 tagacttttcacccgtgctgccgcacgggtcatatacaatgcaaaaataatagacaaaagcaaa 242  Q
    |||| ||||||||||||||||||||||||||||||||| || | | ||||||||||||| ||||    
T  53143264 tagatttttcacccgtgctgccgcacgggtcatatacattgtagatataatagacaaaaacaaa 53143327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 188 - 244
Target Start/End: Original strand, 37340614 - 37340669
Alignment:
Q  188 cacccgtgctgccgcacgggtcatatacaatgcaaaaataatagacaaaagcaaaat 244  Q
    ||||||||||| ||||||||||||||||||||  |||||| ||||||||||||||||    
T  37340614 cacccgtgctgacgcacgggtcatatacaatg-taaaatagtagacaaaagcaaaat 37340669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 179 - 242
Target Start/End: Original strand, 12090461 - 12090524
Alignment:
Q  179 tagacttttcacccgtgctgccgcacgggtcatatacaatgcaaaaataatagacaaaagcaaa 242  Q
    |||||||| ||||||||||||||||||||||||||||| || | | ||| ||||||||| ||||    
T  12090461 tagactttccacccgtgctgccgcacgggtcatatacattgtagatatagtagacaaaaacaaa 12090524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 179 - 242
Target Start/End: Original strand, 30824924 - 30824987
Alignment:
Q  179 tagacttttcacccgtgctgccgcacgggtcatatacaatgcaaaaataatagacaaaagcaaa 242  Q
    |||||||| ||||||||||||||||||||||||||||| || | | ||| ||||||||| ||||    
T  30824924 tagactttccacccgtgctgccgcacgggtcatatacattgtagatatagtagacaaaaacaaa 30824987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 179 - 242
Target Start/End: Complemental strand, 37651893 - 37651830
Alignment:
Q  179 tagacttttcacccgtgctgccgcacgggtcatatacaatgcaaaaataatagacaaaagcaaa 242  Q
    |||||||| ||||||||||||||||||||||||||||| || | | ||| ||||||||| ||||    
T  37651893 tagactttccacccgtgctgccgcacgggtcatatacattgtagatatagtagacaaaaacaaa 37651830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 179 - 242
Target Start/End: Complemental strand, 52434851 - 52434788
Alignment:
Q  179 tagacttttcacccgtgctgccgcacgggtcatatacaatgcaaaaataatagacaaaagcaaa 242  Q
    |||||||| ||||||||||||||||||||||||||||| || | | ||| ||||||||| ||||    
T  52434851 tagactttccacccgtgctgccgcacgggtcatatacattgtagatatagtagacaaaaacaaa 52434788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 179 - 216
Target Start/End: Original strand, 16904954 - 16904991
Alignment:
Q  179 tagacttttcacccgtgctgccgcacgggtcatataca 216  Q
    |||||||| |||||||||||||||||||||||||||||    
T  16904954 tagactttccacccgtgctgccgcacgggtcatataca 16904991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 179 - 216
Target Start/End: Complemental strand, 18209738 - 18209701
Alignment:
Q  179 tagacttttcacccgtgctgccgcacgggtcatataca 216  Q
    |||||||| |||||||||||||||||||||||||||||    
T  18209738 tagactttccacccgtgctgccgcacgggtcatataca 18209701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 179 - 216
Target Start/End: Original strand, 31965971 - 31966008
Alignment:
Q  179 tagacttttcacccgtgctgccgcacgggtcatataca 216  Q
    |||||||| |||||||||||||||||||||||||||||    
T  31965971 tagactttccacccgtgctgccgcacgggtcatataca 31966008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 179 - 216
Target Start/End: Original strand, 33139473 - 33139510
Alignment:
Q  179 tagacttttcacccgtgctgccgcacgggtcatataca 216  Q
    |||||||| |||||||||||||||||||||||||||||    
T  33139473 tagactttccacccgtgctgccgcacgggtcatataca 33139510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 179 - 216
Target Start/End: Original strand, 37590806 - 37590843
Alignment:
Q  179 tagacttttcacccgtgctgccgcacgggtcatataca 216  Q
    |||||||| |||||||||||||||||||||||||||||    
T  37590806 tagactttccacccgtgctgccgcacgggtcatataca 37590843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 179 - 216
Target Start/End: Complemental strand, 46256261 - 46256224
Alignment:
Q  179 tagacttttcacccgtgctgccgcacgggtcatataca 216  Q
    |||||||| |||||||||||||||||||||||||||||    
T  46256261 tagactttccacccgtgctgccgcacgggtcatataca 46256224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 179 - 242
Target Start/End: Original strand, 16917890 - 16917953
Alignment:
Q  179 tagacttttcacccgtgctgccgcacgggtcatatacaatgcaaaaataatagacaaaagcaaa 242  Q
    |||||||| |||| |||||||||||||||||||||||| || | | ||| ||||||||| ||||    
T  16917890 tagactttccacctgtgctgccgcacgggtcatatacattgtagatatagtagacaaaaacaaa 16917953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 175 - 216
Target Start/End: Original strand, 45976988 - 45977029
Alignment:
Q  175 taattagacttttcacccgtgctgccgcacgggtcatataca 216  Q
    |||||||||||| || ||||||||| ||||||||||||||||    
T  45976988 taattagactttccatccgtgctgctgcacgggtcatataca 45977029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 179 - 216
Target Start/End: Original strand, 47142802 - 47142839
Alignment:
Q  179 tagacttttcacccgtgctgccgcacgggtcatataca 216  Q
    |||||||| ||||||||||||||||| |||||||||||    
T  47142802 tagactttccacccgtgctgccgcactggtcatataca 47142839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 179 - 216
Target Start/End: Original strand, 48118536 - 48118573
Alignment:
Q  179 tagacttttcacccgtgctgccgcacgggtcatataca 216  Q
    |||||||| |||||||||||||||||| ||||||||||    
T  48118536 tagactttccacccgtgctgccgcacgagtcatataca 48118573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 188 - 216
Target Start/End: Complemental strand, 11238211 - 11238183
Alignment:
Q  188 cacccgtgctgccgcacgggtcatataca 216  Q
    |||||||||||||||||||||||||||||    
T  11238211 cacccgtgctgccgcacgggtcatataca 11238183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 188 - 216
Target Start/End: Original strand, 44376090 - 44376118
Alignment:
Q  188 cacccgtgctgccgcacgggtcatataca 216  Q
    |||||||||||||||||||||||||||||    
T  44376090 cacccgtgctgccgcacgggtcatataca 44376118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 114; Significance: 9e-58; HSPs: 16)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 114; E-Value: 9e-58
Query Start/End: Original strand, 179 - 323
Target Start/End: Complemental strand, 2988948 - 2988803
Alignment:
Q  179 tagacttttcacccgtgctgccgcacgggtcatatacaatgcaaaaataatagacaaaagcaaaattatatcgcacggtcgcaactcaatattaaaatat 278  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||| |||||||||||||||| ||||||||||||||||||||| |    
T  2988948 tagacttttcacccgtgctgccgcatgggtcatatacaatgcaaaaacaatagacaaaaacaaaattatatcgcacagtcgcaactcaatattaaaatgt 2988849  T
Q  279 -tgtaactttaaagacaacaataatttaagagaatgttgttagtat 323  Q
      ||||||||||||||||||||||||||||||||||||||||||||    
T  2988848 cagtaactttaaagacaacaataatttaagagaatgttgttagtat 2988803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 179 - 307
Target Start/End: Original strand, 25889041 - 25889167
Alignment:
Q  179 tagacttttcacccgtgctgccgcacgggtcatatacaatgcaaaaataatagacaaaagcaaaattatatcgcacggtcgcaactcaatattaaaatat 278  Q
    |||||||| ||| ||||||||||||||||||||||||||||  |||||| ||||| |||||||||| ||| || ||  | | |||| | ||||||||  |    
T  25889041 tagactttccactcgtgctgccgcacgggtcatatacaatg-taaaatagtagac-aaagcaaaatgataacgtacatttggaacttattattaaaacgt 25889138  T
Q  279 tgtaactttaaagacaacaataatttaag 307  Q
      || ||||||| ||||||||||||||||    
T  25889139 cttagctttaaatacaacaataatttaag 25889167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 179 - 242
Target Start/End: Complemental strand, 6120779 - 6120716
Alignment:
Q  179 tagacttttcacccgtgctgccgcacgggtcatatacaatgcaaaaataatagacaaaagcaaa 242  Q
    |||||||| ||||||||||||||||||||||||||||| || | | ||| ||||||||| ||||    
T  6120779 tagactttccacccgtgctgccgcacgggtcatatacattgtagatatagtagacaaaaacaaa 6120716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 179 - 242
Target Start/End: Complemental strand, 18351778 - 18351715
Alignment:
Q  179 tagacttttcacccgtgctgccgcacgggtcatatacaatgcaaaaataatagacaaaagcaaa 242  Q
    |||||||| ||||||||||||||||||||||||||||| || | | ||| ||||||||| ||||    
T  18351778 tagactttccacccgtgctgccgcacgggtcatatacattgtagatatagtagacaaaaacaaa 18351715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 179 - 242
Target Start/End: Original strand, 27944798 - 27944861
Alignment:
Q  179 tagacttttcacccgtgctgccgcacgggtcatatacaatgcaaaaataatagacaaaagcaaa 242  Q
    |||||||| ||||||||||||||||||||||||||||| || | | ||| ||||||||| ||||    
T  27944798 tagactttccacccgtgctgccgcacgggtcatatacattgtagatatagtagacaaaaacaaa 27944861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 179 - 242
Target Start/End: Complemental strand, 41664737 - 41664674
Alignment:
Q  179 tagacttttcacccgtgctgccgcacgggtcatatacaatgcaaaaataatagacaaaagcaaa 242  Q
    |||||||| ||||||||||||||||||||||||||||| || | | ||| ||||||||| ||||    
T  41664737 tagactttccacccgtgctgccgcacgggtcatatacattgtagatatagtagacaaaaacaaa 41664674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 179 - 242
Target Start/End: Complemental strand, 44902308 - 44902245
Alignment:
Q  179 tagacttttcacccgtgctgccgcacgggtcatatacaatgcaaaaataatagacaaaagcaaa 242  Q
    |||||||| ||||||||||||||||||||||||||||| || | | ||| ||||||||| ||||    
T  44902308 tagactttccacccgtgctgccgcacgggtcatatacattgtagatatagtagacaaaaacaaa 44902245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 179 - 216
Target Start/End: Complemental strand, 8700488 - 8700451
Alignment:
Q  179 tagacttttcacccgtgctgccgcacgggtcatataca 216  Q
    |||||||| |||||||||||||||||||||||||||||    
T  8700488 tagactttccacccgtgctgccgcacgggtcatataca 8700451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 179 - 216
Target Start/End: Original strand, 19596365 - 19596402
Alignment:
Q  179 tagacttttcacccgtgctgccgcacgggtcatataca 216  Q
    |||||||| |||||||||||||||||||||||||||||    
T  19596365 tagactttccacccgtgctgccgcacgggtcatataca 19596402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 179 - 216
Target Start/End: Complemental strand, 20545052 - 20545015
Alignment:
Q  179 tagacttttcacccgtgctgccgcacgggtcatataca 216  Q
    |||||||| |||||||||||||||||||||||||||||    
T  20545052 tagactttccacccgtgctgccgcacgggtcatataca 20545015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 179 - 219
Target Start/End: Original strand, 22139563 - 22139603
Alignment:
Q  179 tagacttttcacccgtgctgccgcacgggtcatatacaatg 219  Q
    ||||||||||||||||| ||| |||||||||||||||||||    
T  22139563 tagacttttcacccgtgttgcagcacgggtcatatacaatg 22139603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 177 - 216
Target Start/End: Complemental strand, 31424238 - 31424199
Alignment:
Q  177 attagacttttcacccgtgctgccgcacgggtcatataca 216  Q
    |||||||||| |||||||||||||||||| ||||||||||    
T  31424238 attagactttccacccgtgctgccgcacgagtcatataca 31424199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 179 - 242
Target Start/End: Complemental strand, 41663464 - 41663401
Alignment:
Q  179 tagacttttcacccgtgctgccgcacgggtcatatacaatgcaaaaataatagacaaaagcaaa 242  Q
    |||||||| |||||||||||||||| |||||||||||| || | | ||| ||||||||| ||||    
T  41663464 tagactttccacccgtgctgccgcatgggtcatatacattgtagatatagtagacaaaaacaaa 41663401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 179 - 242
Target Start/End: Complemental strand, 42442191 - 42442128
Alignment:
Q  179 tagacttttcacccgtgctgccgcacgggtcatatacaatgcaaaaataatagacaaaagcaaa 242  Q
    |||||||| |||||||| |||||||||||||||||||| || | | ||| ||||||||| ||||    
T  42442191 tagactttccacccgtgttgccgcacgggtcatatacattgtagatatagtagacaaaaacaaa 42442128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 175 - 216
Target Start/End: Original strand, 26231257 - 26231298
Alignment:
Q  175 taattagacttttcacccgtgctgccgcacgggtcatataca 216  Q
    ||||||||||||||||||||||| |||||| ||| |||||||    
T  26231257 taattagacttttcacccgtgctaccgcacaggttatataca 26231298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 188 - 241
Target Start/End: Complemental strand, 31572499 - 31572446
Alignment:
Q  188 cacccgtgctgccgcacgggtcatatacaatgcaaaaataatagacaaaagcaa 241  Q
    ||||||||||||||||||||||||||||| || ||   || |||||||||||||    
T  31572499 cacccgtgctgccgcacgggtcatatacattgtaagtgtagtagacaaaagcaa 31572446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 110; Significance: 2e-55; HSPs: 21)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 179 - 331
Target Start/End: Original strand, 45115430 - 45115583
Alignment:
Q  179 tagacttttcacccgtgctgccgcacgggtcatatacaatgcaaaaataatagacaaaagcaaaattatatcgcacggtcgcaactcaatattaaaatat 278  Q
    ||||||||||||||||| || ||||| |||||||||||||||||||| ||||||||||| |||||||||||||||| ||||||||||||||||||||| |    
T  45115430 tagacttttcacccgtgatgtcgcacaggtcatatacaatgcaaaaacaatagacaaaaacaaaattatatcgcacagtcgcaactcaatattaaaatgt 45115529  T
Q  279 -tgtaactttaaagacaacaataatttaagagaatgttgttagtatacctcgta 331  Q
      |||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  45115530 cagtaactttaaagacaacaataatttaagagaatgttgttagtatgcctcgta 45115583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 179 - 242
Target Start/End: Complemental strand, 1232023 - 1231960
Alignment:
Q  179 tagacttttcacccgtgctgccgcacgggtcatatacaatgcaaaaataatagacaaaagcaaa 242  Q
    |||||||| ||||||||||||||||||||||||||||| || ||| ||| ||||||||| ||||    
T  1232023 tagactttccacccgtgctgccgcacgggtcatatacattgtaaatatagtagacaaaaacaaa 1231960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 175 - 242
Target Start/End: Complemental strand, 50326232 - 50326165
Alignment:
Q  175 taattagacttttcacccgtgctgccgcacgggtcatatacaatgcaaaaataatagacaaaagcaaa 242  Q
    |||||||||||| ||||||||||||||||||||||||||||| || | | ||| ||||||||| ||||    
T  50326232 taattagactttccacccgtgctgccgcacgggtcatatacattgtagatatagtagacaaaaacaaa 50326165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 179 - 237
Target Start/End: Original strand, 2951368 - 2951426
Alignment:
Q  179 tagacttttcacccgtgctgccgcacgggtcatatacaatgcaaaaataatagacaaaa 237  Q
    |||||||| ||||||||||||||||||||||||||||| || ||| |||||| ||||||    
T  2951368 tagactttccacccgtgctgccgcacgggtcatatacattgtaaatataataaacaaaa 2951426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 181 - 249
Target Start/End: Complemental strand, 36465920 - 36465852
Alignment:
Q  181 gacttttcacccgtgctgccgcacgggtcatatacaatgcaaaaataatagacaaaagcaaaattatat 249  Q
    |||||||||||||||||||||||| ||||||||||  || ||| ||| | ||||||||||| |||||||    
T  36465920 gacttttcacccgtgctgccgcacaggtcatatacggtgtaaatatagttgacaaaagcaagattatat 36465852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 179 - 242
Target Start/End: Complemental strand, 4266608 - 4266545
Alignment:
Q  179 tagacttttcacccgtgctgccgcacgggtcatatacaatgcaaaaataatagacaaaagcaaa 242  Q
    |||||||| ||||||||||||||||||||||||||||| || | | ||| ||||||||| ||||    
T  4266608 tagactttccacccgtgctgccgcacgggtcatatacattgtagatatagtagacaaaaacaaa 4266545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 179 - 242
Target Start/End: Complemental strand, 29942245 - 29942182
Alignment:
Q  179 tagacttttcacccgtgctgccgcacgggtcatatacaatgcaaaaataatagacaaaagcaaa 242  Q
    |||||||| ||||||||||||||||||||||||||||| || | | ||| ||||||||| ||||    
T  29942245 tagactttccacccgtgctgccgcacgggtcatatacattgtagatatagtagacaaaaacaaa 29942182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 179 - 242
Target Start/End: Original strand, 31018202 - 31018265
Alignment:
Q  179 tagacttttcacccgtgctgccgcacgggtcatatacaatgcaaaaataatagacaaaagcaaa 242  Q
    |||||||| ||||||||||||||||||||||||||||| || | | ||| ||||||||| ||||    
T  31018202 tagactttccacccgtgctgccgcacgggtcatatacattgtagatatagtagacaaaaacaaa 31018265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 179 - 242
Target Start/End: Original strand, 34888688 - 34888751
Alignment:
Q  179 tagacttttcacccgtgctgccgcacgggtcatatacaatgcaaaaataatagacaaaagcaaa 242  Q
    |||||||| ||||||||||||||||||||||||||||| || | | ||| ||||||||| ||||    
T  34888688 tagactttccacccgtgctgccgcacgggtcatatacattgtagatatagtagacaaaaacaaa 34888751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 179 - 242
Target Start/End: Original strand, 38913749 - 38913812
Alignment:
Q  179 tagacttttcacccgtgctgccgcacgggtcatatacaatgcaaaaataatagacaaaagcaaa 242  Q
    |||||||| ||||||||||||||||||||||||||||| || | | ||| ||||||||| ||||    
T  38913749 tagactttccacccgtgctgccgcacgggtcatatacattgtagatatagtagacaaaaacaaa 38913812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 179 - 216
Target Start/End: Complemental strand, 9216258 - 9216221
Alignment:
Q  179 tagacttttcacccgtgctgccgcacgggtcatataca 216  Q
    |||||||| |||||||||||||||||||||||||||||    
T  9216258 tagactttccacccgtgctgccgcacgggtcatataca 9216221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 179 - 216
Target Start/End: Original strand, 18855235 - 18855272
Alignment:
Q  179 tagacttttcacccgtgctgccgcacgggtcatataca 216  Q
    |||||||| |||||||||||||||||||||||||||||    
T  18855235 tagactttccacccgtgctgccgcacgggtcatataca 18855272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 179 - 213
Target Start/End: Complemental strand, 26497683 - 26497649
Alignment:
Q  179 tagacttttcacccgtgctgccgcacgggtcatat 213  Q
    |||||||| ||||||||||||||||||||||||||    
T  26497683 tagactttgcacccgtgctgccgcacgggtcatat 26497649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 179 - 216
Target Start/End: Complemental strand, 2590507 - 2590470
Alignment:
Q  179 tagacttttcacccgtgctgccgcacgggtcatataca 216  Q
    |||||||| |||||||||||||||||| ||||||||||    
T  2590507 tagactttccacccgtgctgccgcacgagtcatataca 2590470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 179 - 216
Target Start/End: Original strand, 18706511 - 18706548
Alignment:
Q  179 tagacttttcacccgtgctgccgcacgggtcatataca 216  Q
    |||||||| |||||||||||||||||| ||||||||||    
T  18706511 tagactttccacccgtgctgccgcacgagtcatataca 18706548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 179 - 216
Target Start/End: Original strand, 23482709 - 23482746
Alignment:
Q  179 tagacttttcacccgtgctgccgcacgggtcatataca 216  Q
    |||||||| |||||||||||||||||| ||||||||||    
T  23482709 tagactttccacccgtgctgccgcacgagtcatataca 23482746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 188 - 245
Target Start/End: Original strand, 28947465 - 28947522
Alignment:
Q  188 cacccgtgctgccgcacgggtcatatacaatgcaaaaataatagacaaaagcaaaatt 245  Q
    ||||||||||||||||||||||||||||| |  ||   || |||||||||||||||||    
T  28947465 cacccgtgctgccgcacgggtcatatacattataagtgtagtagacaaaagcaaaatt 28947522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 179 - 216
Target Start/End: Original strand, 52687116 - 52687153
Alignment:
Q  179 tagacttttcacccgtgctgccgcacgggtcatataca 216  Q
    |||||||| ||||||||||| |||||||||||||||||    
T  52687116 tagactttccacccgtgctgtcgcacgggtcatataca 52687153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 179 - 216
Target Start/End: Complemental strand, 52957103 - 52957066
Alignment:
Q  179 tagacttttcacccgtgctgccgcacgggtcatataca 216  Q
    |||||| | |||||||||||||||||||||||||||||    
T  52957103 tagactctccacccgtgctgccgcacgggtcatataca 52957066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 184 - 212
Target Start/End: Complemental strand, 21981247 - 21981219
Alignment:
Q  184 ttttcacccgtgctgccgcacgggtcata 212  Q
    |||||||||||||||||||||||||||||    
T  21981247 ttttcacccgtgctgccgcacgggtcata 21981219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 182 - 242
Target Start/End: Complemental strand, 35614291 - 35614231
Alignment:
Q  182 acttttcacccgtgctgccgcacgggtcatatacaatgcaaaaataatagacaaaagcaaa 242  Q
    ||||| |||||||||| |||||||||||||||||| || |||  || ||||||||| ||||    
T  35614291 actttccacccgtgctaccgcacgggtcatatacattgtaaatgtagtagacaaaaacaaa 35614231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 75; Significance: 2e-34; HSPs: 20)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 13 - 131
Target Start/End: Original strand, 46346919 - 46347041
Alignment:
Q  13 taggcaccgtgtcataa-ctgtgtgagattggagaaatgctcttcagggccttctttagttgcgtgt----taaaaataggaaatattaataagttatct 107  Q
    ||||||||||||| | | |||||||||||||||||||||||||||||||||||||||||||||||||    ||||||||||||||||||||||| || ||    
T  46346919 taggcaccgtgtctttagctgtgtgagattggagaaatgctcttcagggccttctttagttgcgtgtttaataaaaataggaaatattaataag-tacct 46347017  T
Q  108 taaacattatttaaacaactaaaa 131  Q
    |||||| |||||||||||||||||    
T  46347018 taaacaatatttaaacaactaaaa 46347041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 179 - 242
Target Start/End: Complemental strand, 31373683 - 31373620
Alignment:
Q  179 tagacttttcacccgtgctgccgcacgggtcatatacaatgcaaaaataatagacaaaagcaaa 242  Q
    |||||||| ||||||||||||||||||||||||||||| || | | ||||||||||||| ||||    
T  31373683 tagactttccacccgtgctgccgcacgggtcatatacattgtagatataatagacaaaaacaaa 31373620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 179 - 237
Target Start/End: Complemental strand, 21342050 - 21341992
Alignment:
Q  179 tagacttttcacccgtgctgccgcacgggtcatatacaatgcaaaaataatagacaaaa 237  Q
    |||||||| ||||||||||||||||||||||||||||| || | | |||||||||||||    
T  21342050 tagactttccacccgtgctgccgcacgggtcatatacattgtagatataatagacaaaa 21341992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 172 - 242
Target Start/End: Original strand, 42242149 - 42242219
Alignment:
Q  172 ttgtaattagacttttcacccgtgctgccgcacgggtcatatacaatgcaaaaataatagacaaaagcaaa 242  Q
    |||||| |||||||| ||||||||||||||||||||||||||||| || | | ||| ||||||||| ||||    
T  42242149 ttgtaactagactttccacccgtgctgccgcacgggtcatatacattgtagatatagtagacaaaaacaaa 42242219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 179 - 242
Target Start/End: Original strand, 21804574 - 21804637
Alignment:
Q  179 tagacttttcacccgtgctgccgcacgggtcatatacaatgcaaaaataatagacaaaagcaaa 242  Q
    |||||||| ||||||||||||||||||||||||||||| || | | ||| ||||||||| ||||    
T  21804574 tagactttccacccgtgctgccgcacgggtcatatacattgtagatatagtagacaaaaacaaa 21804637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 179 - 242
Target Start/End: Original strand, 33916949 - 33917012
Alignment:
Q  179 tagacttttcacccgtgctgccgcacgggtcatatacaatgcaaaaataatagacaaaagcaaa 242  Q
    |||||||| ||||||||||||||||||||||||||||| || | | ||| ||||||||| ||||    
T  33916949 tagactttccacccgtgctgccgcacgggtcatatacattgtagatatagtagacaaaaacaaa 33917012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 179 - 242
Target Start/End: Original strand, 38163341 - 38163404
Alignment:
Q  179 tagacttttcacccgtgctgccgcacgggtcatatacaatgcaaaaataatagacaaaagcaaa 242  Q
    |||||||| ||||||||||||||||||||||||||||| || | | ||| ||||||||| ||||    
T  38163341 tagactttccacccgtgctgccgcacgggtcatatacattgtagatatagtagacaaaaacaaa 38163404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 179 - 216
Target Start/End: Complemental strand, 13786397 - 13786360
Alignment:
Q  179 tagacttttcacccgtgctgccgcacgggtcatataca 216  Q
    |||||||| |||||||||||||||||||||||||||||    
T  13786397 tagactttccacccgtgctgccgcacgggtcatataca 13786360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 179 - 216
Target Start/End: Original strand, 16376547 - 16376584
Alignment:
Q  179 tagacttttcacccgtgctgccgcacgggtcatataca 216  Q
    |||||||| |||||||||||||||||||||||||||||    
T  16376547 tagactttccacccgtgctgccgcacgggtcatataca 16376584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 179 - 216
Target Start/End: Complemental strand, 40969118 - 40969081
Alignment:
Q  179 tagacttttcacccgtgctgccgcacgggtcatataca 216  Q
    |||||||| |||||||||||||||||||||||||||||    
T  40969118 tagactttccacccgtgctgccgcacgggtcatataca 40969081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 179 - 242
Target Start/End: Original strand, 3840643 - 3840706
Alignment:
Q  179 tagacttttcacccgtgctgccgcacgggtcatatacaatgcaaaaataatagacaaaagcaaa 242  Q
    |||||||| |||||||||||||||||| |||||||||| || | | ||| ||||||||| ||||    
T  3840643 tagactttccacccgtgctgccgcacgagtcatatacattgtagatatagtagacaaaaacaaa 3840706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 179 - 242
Target Start/End: Original strand, 17178239 - 17178302
Alignment:
Q  179 tagacttttcacccgtgctgccgcacgggtcatatacaatgcaaaaataatagacaaaagcaaa 242  Q
    |||||||| |||||||||||||||| |||||||||||| || | | ||| ||||||||| ||||    
T  17178239 tagactttccacccgtgctgccgcatgggtcatatacattgtagatatagtagacaaaaacaaa 17178302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 179 - 214
Target Start/End: Original strand, 27903419 - 27903454
Alignment:
Q  179 tagacttttcacccgtgctgccgcacgggtcatata 214  Q
    |||||||| |||||||||||||||||||||||||||    
T  27903419 tagactttccacccgtgctgccgcacgggtcatata 27903454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 176 - 214
Target Start/End: Complemental strand, 36608772 - 36608734
Alignment:
Q  176 aattagacttttcacccgtgctgccgcacgggtcatata 214  Q
    ||||||||||||||||  |||||||||||||||||||||    
T  36608772 aattagacttttcacctatgctgccgcacgggtcatata 36608734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 179 - 216
Target Start/End: Complemental strand, 21670208 - 21670171
Alignment:
Q  179 tagacttttcacccgtgctgccgcacgggtcatataca 216  Q
    |||||||| ||||||||||||||||| |||||||||||    
T  21670208 tagactttccacccgtgctgccgcacaggtcatataca 21670171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 179 - 216
Target Start/End: Original strand, 27138530 - 27138567
Alignment:
Q  179 tagacttttcacccgtgctgccgcacgggtcatataca 216  Q
    |||||||| ||||||||||||||||| |||||||||||    
T  27138530 tagactttccacccgtgctgccgcacaggtcatataca 27138567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 188 - 241
Target Start/End: Complemental strand, 31097930 - 31097877
Alignment:
Q  188 cacccgtgctgccgcacgggtcatatacaatgcaaaaataatagacaaaagcaa 241  Q
    ||||||||||||||||||||||||||||| || ||   || |||||||||||||    
T  31097930 cacccgtgctgccgcacgggtcatatacattgtaagtgtagtagacaaaagcaa 31097877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 175 - 216
Target Start/End: Original strand, 43933542 - 43933583
Alignment:
Q  175 taattagacttttcacccgtgctgccgcacgggtcatataca 216  Q
    |||||||||||| |||||||||| ||||| ||||||||||||    
T  43933542 taattagactttccacccgtgctaccgcaagggtcatataca 43933583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 182 - 246
Target Start/End: Original strand, 21314164 - 21314228
Alignment:
Q  182 acttttcacccgtgctgccgcacgggtcatatacaatgcaaaaataatagacaaaagcaaaatta 246  Q
    ||||||||| |||||| |||||| |||||||||||||| |||  || |||  |||||||||||||    
T  21314164 acttttcacgcgtgcttccgcacaggtcatatacaatgtaaatgtagtagggaaaagcaaaatta 21314228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 189 - 245
Target Start/End: Complemental strand, 32661086 - 32661030
Alignment:
Q  189 acccgtgctgccgcacgggtcatatacaatgcaaaaataatagacaaaagcaaaatt 245  Q
    ||||||||||||||||| |||||||||| || ||   || |||||||||||||||||    
T  32661086 acccgtgctgccgcacgagtcatatacattgtaagtgtagtagacaaaagcaaaatt 32661030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 19)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 179 - 244
Target Start/End: Original strand, 5189789 - 5189854
Alignment:
Q  179 tagacttttcacccgtgctgccgcacgggtcatatacaatgcaaaaataatagacaaaagcaaaat 244  Q
    |||||||| |||||||||| ||||| |||||||||| |||| ||||||| ||||||||||||||||    
T  5189789 tagactttacacccgtgctaccgcaagggtcatatataatgtaaaaatagtagacaaaagcaaaat 5189854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 179 - 242
Target Start/End: Complemental strand, 21098531 - 21098468
Alignment:
Q  179 tagacttttcacccgtgctgccgcacgggtcatatacaatgcaaaaataatagacaaaagcaaa 242  Q
    |||||||| ||||||||||||||||||||||||||||| || | | ||||||||||||| ||||    
T  21098531 tagactttccacccgtgctgccgcacgggtcatatacattgtagatataatagacaaaaacaaa 21098468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 179 - 242
Target Start/End: Original strand, 1941722 - 1941785
Alignment:
Q  179 tagacttttcacccgtgctgccgcacgggtcatatacaatgcaaaaataatagacaaaagcaaa 242  Q
    |||||||| ||||||||||||||||||||||||||||| || | | ||| ||||||||| ||||    
T  1941722 tagactttccacccgtgctgccgcacgggtcatatacattgtagatatagtagacaaaaacaaa 1941785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 179 - 242
Target Start/End: Complemental strand, 3898649 - 3898586
Alignment:
Q  179 tagacttttcacccgtgctgccgcacgggtcatatacaatgcaaaaataatagacaaaagcaaa 242  Q
    |||||||| ||||||||||||||||||||||||||||| || | | ||| ||||||||| ||||    
T  3898649 tagactttccacccgtgctgccgcacgggtcatatacattgtagatatagtagacaaaaacaaa 3898586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 179 - 242
Target Start/End: Complemental strand, 12264427 - 12264364
Alignment:
Q  179 tagacttttcacccgtgctgccgcacgggtcatatacaatgcaaaaataatagacaaaagcaaa 242  Q
    |||||||| ||||||||||||||||||||||||||||| || | | ||| ||||||||| ||||    
T  12264427 tagactttccacccgtgctgccgcacgggtcatatacattgtagatatagtagacaaaaacaaa 12264364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 179 - 242
Target Start/End: Complemental strand, 34121582 - 34121519
Alignment:
Q  179 tagacttttcacccgtgctgccgcacgggtcatatacaatgcaaaaataatagacaaaagcaaa 242  Q
    |||||||| ||||||||||||||||||||||||||||| || | | ||| ||||||||| ||||    
T  34121582 tagactttccacccgtgctgccgcacgggtcatatacattgtagatatagtagacaaaaacaaa 34121519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 179 - 242
Target Start/End: Original strand, 38653929 - 38653992
Alignment:
Q  179 tagacttttcacccgtgctgccgcacgggtcatatacaatgcaaaaataatagacaaaagcaaa 242  Q
    |||||||| ||||||||||||||||||||||||||||| || | | ||| ||||||||| ||||    
T  38653929 tagactttccacccgtgctgccgcacgggtcatatacattgtagatatagtagacaaaaacaaa 38653992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 179 - 242
Target Start/End: Original strand, 40014655 - 40014718
Alignment:
Q  179 tagacttttcacccgtgctgccgcacgggtcatatacaatgcaaaaataatagacaaaagcaaa 242  Q
    |||||||| ||||||||||||||||||||||||||||| || | | |||||| |||||| ||||    
T  40014655 tagactttccacccgtgctgccgcacgggtcatatacattgtagatataataaacaaaaacaaa 40014718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 179 - 242
Target Start/End: Original strand, 43363613 - 43363676
Alignment:
Q  179 tagacttttcacccgtgctgccgcacgggtcatatacaatgcaaaaataatagacaaaagcaaa 242  Q
    |||||||| ||||||||||||||||||||||||||||| || | | ||| ||||||||| ||||    
T  43363613 tagactttccacccgtgctgccgcacgggtcatatacattgtagatatagtagacaaaaacaaa 43363676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 179 - 242
Target Start/End: Complemental strand, 49672789 - 49672726
Alignment:
Q  179 tagacttttcacccgtgctgccgcacgggtcatatacaatgcaaaaataatagacaaaagcaaa 242  Q
    |||||||| ||||||||||||||||||||||||||||| || | | ||| ||||||||| ||||    
T  49672789 tagactttccacccgtgctgccgcacgggtcatatacattgtagatatagtagacaaaaacaaa 49672726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 179 - 216
Target Start/End: Original strand, 4584436 - 4584473
Alignment:
Q  179 tagacttttcacccgtgctgccgcacgggtcatataca 216  Q
    |||||||| |||||||||||||||||||||||||||||    
T  4584436 tagactttccacccgtgctgccgcacgggtcatataca 4584473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 179 - 216
Target Start/End: Original strand, 6460170 - 6460207
Alignment:
Q  179 tagacttttcacccgtgctgccgcacgggtcatataca 216  Q
    |||||||| |||||||||||||||||||||||||||||    
T  6460170 tagactttccacccgtgctgccgcacgggtcatataca 6460207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 179 - 216
Target Start/End: Complemental strand, 26949025 - 26948988
Alignment:
Q  179 tagacttttcacccgtgctgccgcacgggtcatataca 216  Q
    |||||||| |||||||||||||||||||||||||||||    
T  26949025 tagactttccacccgtgctgccgcacgggtcatataca 26948988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 179 - 216
Target Start/End: Original strand, 36076456 - 36076493
Alignment:
Q  179 tagacttttcacccgtgctgccgcacgggtcatataca 216  Q
    |||||||| |||||||||||||||||||||||||||||    
T  36076456 tagactttccacccgtgctgccgcacgggtcatataca 36076493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 173 - 242
Target Start/End: Original strand, 49506345 - 49506414
Alignment:
Q  173 tgtaattagacttttcacccgtgctgccgcacgggtcatatacaatgcaaaaataatagacaaaagcaaa 242  Q
    ||||| |||||||| ||||||| ||||||||||||||||||||| || | | ||| ||||||||| ||||    
T  49506345 tgtaactagactttccacccgtactgccgcacgggtcatatacattgtagatatagtagacaaaaacaaa 49506414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 179 - 214
Target Start/End: Complemental strand, 54073257 - 54073222
Alignment:
Q  179 tagacttttcacccgtgctgccgcacgggtcatata 214  Q
    |||||||| |||||||||||||||||||||||||||    
T  54073257 tagactttccacccgtgctgccgcacgggtcatata 54073222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 188 - 245
Target Start/End: Complemental strand, 37099762 - 37099705
Alignment:
Q  188 cacccgtgctgccgcacgggtcatatacaatgcaaaaataatagacaaaagcaaaatt 245  Q
    ||||||||||||||||||||||||||||| || ||   || |||||||||| ||||||    
T  37099762 cacccgtgctgccgcacgggtcatatacattgtaagtgtagtagacaaaagtaaaatt 37099705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 179 - 219
Target Start/End: Original strand, 46921426 - 46921466
Alignment:
Q  179 tagacttttcacccgtgctgccgcacgggtcatatacaatg 219  Q
    |||||||||||||||||||  |||||| |||||||||||||    
T  46921426 tagacttttcacccgtgctttcgcacgagtcatatacaatg 46921466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 188 - 216
Target Start/End: Original strand, 53556922 - 53556950
Alignment:
Q  188 cacccgtgctgccgcacgggtcatataca 216  Q
    |||||||||||||||||||||||||||||    
T  53556922 cacccgtgctgccgcacgggtcatataca 53556950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 19)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 179 - 242
Target Start/End: Original strand, 28099599 - 28099662
Alignment:
Q  179 tagacttttcacccgtgctgccgcacgggtcatatacaatgcaaaaataatagacaaaagcaaa 242  Q
    |||||||| ||||||||||||||||||||||||||||| || | | ||||||||||||| ||||    
T  28099599 tagactttccacccgtgctgccgcacgggtcatatacattgtagatataatagacaaaaacaaa 28099662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 177 - 219
Target Start/End: Original strand, 25342637 - 25342679
Alignment:
Q  177 attagacttttcacccgtgctgccgcacgggtcatatacaatg 219  Q
    ||||||||||||||||||||||||||||| |||||||||||||    
T  25342637 attagacttttcacccgtgctgccgcacgagtcatatacaatg 25342679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 179 - 244
Target Start/End: Complemental strand, 30143047 - 30142982
Alignment:
Q  179 tagacttttcacccgtgctgccgcacgggtcatatacaatgcaaaaataatagacaaaagcaaaat 244  Q
    |||||||| |||||||| ||||||||| | |||||| |||| ||||||| ||||||||||||||||    
T  30143047 tagactttacacccgtgttgccgcacgagacatatataatgtaaaaatagtagacaaaagcaaaat 30142982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 179 - 242
Target Start/End: Complemental strand, 2267003 - 2266940
Alignment:
Q  179 tagacttttcacccgtgctgccgcacgggtcatatacaatgcaaaaataatagacaaaagcaaa 242  Q
    |||||||| ||||||||||||||||||||||||||||| || | | ||| ||||||||| ||||    
T  2267003 tagactttccacccgtgctgccgcacgggtcatatacattgtagatatagtagacaaaaacaaa 2266940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 179 - 242
Target Start/End: Original strand, 12597267 - 12597330
Alignment:
Q  179 tagacttttcacccgtgctgccgcacgggtcatatacaatgcaaaaataatagacaaaagcaaa 242  Q
    |||||||| ||||||||||||||||||||||||||||| || | | ||| ||||||||| ||||    
T  12597267 tagactttccacccgtgctgccgcacgggtcatatacattgtagatatagtagacaaaaacaaa 12597330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 179 - 242
Target Start/End: Complemental strand, 19997892 - 19997829
Alignment:
Q  179 tagacttttcacccgtgctgccgcacgggtcatatacaatgcaaaaataatagacaaaagcaaa 242  Q
    |||||||| ||||||||||||||||||||||||||||| || | | ||| ||||||||| ||||    
T  19997892 tagactttccacccgtgctgccgcacgggtcatatacattgtagatatagtagacaaaaacaaa 19997829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 179 - 242
Target Start/End: Complemental strand, 33646169 - 33646106
Alignment:
Q  179 tagacttttcacccgtgctgccgcacgggtcatatacaatgcaaaaataatagacaaaagcaaa 242  Q
    |||||||| ||||||||||||||||||||||||||||| || | | ||| ||||||||| ||||    
T  33646169 tagactttccacccgtgctgccgcacgggtcatatacattgtagatatagtagacaaaaacaaa 33646106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 179 - 216
Target Start/End: Original strand, 162671 - 162708
Alignment:
Q  179 tagacttttcacccgtgctgccgcacgggtcatataca 216  Q
    |||||||| |||||||||||||||||||||||||||||    
T  162671 tagactttccacccgtgctgccgcacgggtcatataca 162708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 179 - 216
Target Start/End: Complemental strand, 3593120 - 3593083
Alignment:
Q  179 tagacttttcacccgtgctgccgcacgggtcatataca 216  Q
    |||||||| |||||||||||||||||||||||||||||    
T  3593120 tagactttccacccgtgctgccgcacgggtcatataca 3593083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 179 - 216
Target Start/End: Complemental strand, 8539780 - 8539743
Alignment:
Q  179 tagacttttcacccgtgctgccgcacgggtcatataca 216  Q
    |||||||| |||||||||||||||||||||||||||||    
T  8539780 tagactttccacccgtgctgccgcacgggtcatataca 8539743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 188 - 245
Target Start/End: Original strand, 8657075 - 8657132
Alignment:
Q  188 cacccgtgctgccgcacgggtcatatacaatgcaaaaataatagacaaaagcaaaatt 245  Q
    ||||||||||||||||||||||||||||| || ||   || |||||||||||||||||    
T  8657075 cacccgtgctgccgcacgggtcatatacattgtaagtgtagtagacaaaagcaaaatt 8657132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 179 - 219
Target Start/End: Original strand, 2965461 - 2965501
Alignment:
Q  179 tagacttttcacccgtgctgccgcacgggtcatatacaatg 219  Q
    ||||||| |||||||||||||||||||||||||| ||||||    
T  2965461 tagacttatcacccgtgctgccgcacgggtcataaacaatg 2965501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 179 - 225
Target Start/End: Original strand, 14986393 - 14986439
Alignment:
Q  179 tagacttttcacccgtgctgccgcacgggtcatatacaatgcaaaaa 225  Q
    |||||||| |||||||||||| |||||||||||||||| || |||||    
T  14986393 tagactttgcacccgtgctgctgcacgggtcatatacattgaaaaaa 14986439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 179 - 216
Target Start/End: Original strand, 1405565 - 1405602
Alignment:
Q  179 tagacttttcacccgtgctgccgcacgggtcatataca 216  Q
    |||| ||| |||||||||||||||||||||||||||||    
T  1405565 tagattttccacccgtgctgccgcacgggtcatataca 1405602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 179 - 216
Target Start/End: Original strand, 6300711 - 6300748
Alignment:
Q  179 tagacttttcacccgtgctgccgcacgggtcatataca 216  Q
    |||||| | |||||||||||||||||||||||||||||    
T  6300711 tagactatgcacccgtgctgccgcacgggtcatataca 6300748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 179 - 216
Target Start/End: Original strand, 6307521 - 6307558
Alignment:
Q  179 tagacttttcacccgtgctgccgcacgggtcatataca 216  Q
    |||||| | |||||||||||||||||||||||||||||    
T  6307521 tagactatgcacccgtgctgccgcacgggtcatataca 6307558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 179 - 216
Target Start/End: Complemental strand, 13533994 - 13533957
Alignment:
Q  179 tagacttttcacccgtgctgccgcacgggtcatataca 216  Q
    |||| ||| |||||||||||||||||||||||||||||    
T  13533994 tagattttccacccgtgctgccgcacgggtcatataca 13533957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 179 - 216
Target Start/End: Complemental strand, 15044949 - 15044912
Alignment:
Q  179 tagacttttcacccgtgctgccgcacgggtcatataca 216  Q
    |||||||| ||||||||||||||||| |||||||||||    
T  15044949 tagactttccacccgtgctgccgcacaggtcatataca 15044912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 179 - 216
Target Start/End: Original strand, 24165093 - 24165130
Alignment:
Q  179 tagacttttcacccgtgctgccgcacgggtcatataca 216  Q
    ||||||| |||||||||||| |||||||||||||||||    
T  24165093 tagacttatcacccgtgctgacgcacgggtcatataca 24165130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 38; Significance: 0.000000000002; HSPs: 19)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 188 - 245
Target Start/End: Original strand, 405365 - 405422
Alignment:
Q  188 cacccgtgctgccgcacgggtcatatacaatgcaaaaataatagacaaaagcaaaatt 245  Q
    ||||||||||||||||||||||||||||| || ||  ||| |||||||||||||||||    
T  405365 cacccgtgctgccgcacgggtcatatacattgtaagtatagtagacaaaagcaaaatt 405422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 174 - 242
Target Start/End: Original strand, 32110858 - 32110926
Alignment:
Q  174 gtaattagacttttcacccgtgctgccgcacgggtcatatacaatgcaaaaataatagacaaaagcaaa 242  Q
    |||| |||||||| ||||||||||||||||||||||||||||| || | | ||| ||||||||| ||||    
T  32110858 gtaactagactttccacccgtgctgccgcacgggtcatatacattgtagatatagtagacaaaaacaaa 32110926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 179 - 242
Target Start/End: Original strand, 995817 - 995880
Alignment:
Q  179 tagacttttcacccgtgctgccgcacgggtcatatacaatgcaaaaataatagacaaaagcaaa 242  Q
    |||||||| ||||||||||||||||||||||||||||| || | | ||| ||||||||| ||||    
T  995817 tagactttccacccgtgctgccgcacgggtcatatacattgtagatatagtagacaaaaacaaa 995880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 179 - 242
Target Start/End: Original strand, 6299022 - 6299085
Alignment:
Q  179 tagacttttcacccgtgctgccgcacgggtcatatacaatgcaaaaataatagacaaaagcaaa 242  Q
    |||||||| ||||||||||||||||||||||||||||| || | | ||| ||||||||| ||||    
T  6299022 tagactttccacccgtgctgccgcacgggtcatatacattgtagatatagtagacaaaaacaaa 6299085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 179 - 242
Target Start/End: Complemental strand, 10478164 - 10478101
Alignment:
Q  179 tagacttttcacccgtgctgccgcacgggtcatatacaatgcaaaaataatagacaaaagcaaa 242  Q
    |||||||| ||||||||||||||||||||||||||||| || | | ||| ||||||||| ||||    
T  10478164 tagactttccacccgtgctgccgcacgggtcatatacattgtagatatagtagacaaaaacaaa 10478101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 179 - 242
Target Start/End: Complemental strand, 15961359 - 15961296
Alignment:
Q  179 tagacttttcacccgtgctgccgcacgggtcatatacaatgcaaaaataatagacaaaagcaaa 242  Q
    |||||||| ||||||||||||||||||||||||||||| || | | ||| ||||||||| ||||    
T  15961359 tagactttccacccgtgctgccgcacgggtcatatacattgtagatatagtagacaaaaacaaa 15961296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 179 - 242
Target Start/End: Complemental strand, 18175608 - 18175545
Alignment:
Q  179 tagacttttcacccgtgctgccgcacgggtcatatacaatgcaaaaataatagacaaaagcaaa 242  Q
    |||||||| ||||||||||||||||||||||||||||| || | | ||| ||||||||| ||||    
T  18175608 tagactttccacccgtgctgccgcacgggtcatatacattgtagatatagtagacaaaaacaaa 18175545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 179 - 242
Target Start/End: Original strand, 30473886 - 30473949
Alignment:
Q  179 tagacttttcacccgtgctgccgcacgggtcatatacaatgcaaaaataatagacaaaagcaaa 242  Q
    |||||||| ||||||||||||||||||||||||||||| || | | ||| ||||||||| ||||    
T  30473886 tagactttccacccgtgctgccgcacgggtcatatacattgtagatatagtagacaaaaacaaa 30473949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 179 - 216
Target Start/End: Original strand, 23353624 - 23353661
Alignment:
Q  179 tagacttttcacccgtgctgccgcacgggtcatataca 216  Q
    |||||||| |||||||||||||||||||||||||||||    
T  23353624 tagactttccacccgtgctgccgcacgggtcatataca 23353661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 179 - 242
Target Start/End: Complemental strand, 18997927 - 18997864
Alignment:
Q  179 tagacttttcacccgtgctgccgcacgggtcatatacaatgcaaaaataatagacaaaagcaaa 242  Q
    |||||| | ||||||||||||||||||||||||||||| || | | ||| ||||||||| ||||    
T  18997927 tagactatccacccgtgctgccgcacgggtcatatacattgtagatatagtagacaaaaacaaa 18997864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 179 - 242
Target Start/End: Original strand, 44832188 - 44832251
Alignment:
Q  179 tagacttttcacccgtgctgccgcacgggtcatatacaatgcaaaaataatagacaaaagcaaa 242  Q
    |||||||| |||||||| |||||||||||||||||||| || | | ||| ||||||||| ||||    
T  44832188 tagactttccacccgtgttgccgcacgggtcatatacattgtagatatagtagacaaaaacaaa 44832251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 178 - 216
Target Start/End: Complemental strand, 18569093 - 18569055
Alignment:
Q  178 ttagacttttcacccgtgctgccgcacgggtcatataca 216  Q
    ||||||||| |||||||||| ||||||||||||||||||    
T  18569093 ttagactttccacccgtgctaccgcacgggtcatataca 18569055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 179 - 216
Target Start/End: Complemental strand, 11725417 - 11725380
Alignment:
Q  179 tagacttttcacccgtgctgccgcacgggtcatataca 216  Q
    |||||||| |||||||||||| ||||||||||||||||    
T  11725417 tagactttccacccgtgctgctgcacgggtcatataca 11725380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 179 - 216
Target Start/End: Complemental strand, 18842131 - 18842094
Alignment:
Q  179 tagacttttcacccgtgctgccgcacgggtcatataca 216  Q
    |||||||| ||||||| |||||||||||||||||||||    
T  18842131 tagactttccacccgttctgccgcacgggtcatataca 18842094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 179 - 216
Target Start/End: Complemental strand, 19241053 - 19241016
Alignment:
Q  179 tagacttttcacccgtgctgccgcacgggtcatataca 216  Q
    |||||||| |||||| ||||||||||||||||||||||    
T  19241053 tagactttccacccgcgctgccgcacgggtcatataca 19241016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 179 - 216
Target Start/End: Complemental strand, 19314237 - 19314200
Alignment:
Q  179 tagacttttcacccgtgctgccgcacgggtcatataca 216  Q
    |||||||| |||||| ||||||||||||||||||||||    
T  19314237 tagactttccacccgcgctgccgcacgggtcatataca 19314200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 179 - 216
Target Start/End: Complemental strand, 28583082 - 28583045
Alignment:
Q  179 tagacttttcacccgtgctgccgcacgggtcatataca 216  Q
    |||| ||| |||||||||||||||||||||||||||||    
T  28583082 tagattttccacccgtgctgccgcacgggtcatataca 28583045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 179 - 216
Target Start/End: Complemental strand, 34815283 - 34815246
Alignment:
Q  179 tagacttttcacccgtgctgccgcacgggtcatataca 216  Q
    ||||||| |||||||||||| |||||||||||||||||    
T  34815283 tagacttatcacccgtgctgacgcacgggtcatataca 34815246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 179 - 216
Target Start/End: Complemental strand, 39997918 - 39997881
Alignment:
Q  179 tagacttttcacccgtgctgccgcacgggtcatataca 216  Q
    |||| ||| |||||||||||||||||||||||||||||    
T  39997918 tagaatttccacccgtgctgccgcacgggtcatataca 39997881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0836 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0836
Description:

Target: scaffold0836; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 179 - 242
Target Start/End: Original strand, 5280 - 5343
Alignment:
Q  179 tagacttttcacccgtgctgccgcacgggtcatatacaatgcaaaaataatagacaaaagcaaa 242  Q
    |||||||| |||||||||||||||||||| |||||||| || | | ||||||||||||| ||||    
T  5280 tagactttccacccgtgctgccgcacgggacatatacattgtagatataatagacaaaaacaaa 5343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0031 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0031
Description:

Target: scaffold0031; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 179 - 242
Target Start/End: Complemental strand, 46501 - 46438
Alignment:
Q  179 tagacttttcacccgtgctgccgcacgggtcatatacaatgcaaaaataatagacaaaagcaaa 242  Q
    |||||||| ||||||||||||||||||||||||||||| || | | ||| ||||||||| ||||    
T  46501 tagactttccacccgtgctgccgcacgggtcatatacattgtagatatagtagacaaaaacaaa 46438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 36; Significance: 0.00000000003; HSPs: 16)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 179 - 242
Target Start/End: Original strand, 2398944 - 2399007
Alignment:
Q  179 tagacttttcacccgtgctgccgcacgggtcatatacaatgcaaaaataatagacaaaagcaaa 242  Q
    |||||||| ||||||||||||||||||||||||||||| || | | ||| ||||||||| ||||    
T  2398944 tagactttccacccgtgctgccgcacgggtcatatacattgtagatatagtagacaaaaacaaa 2399007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 179 - 242
Target Start/End: Original strand, 10729444 - 10729507
Alignment:
Q  179 tagacttttcacccgtgctgccgcacgggtcatatacaatgcaaaaataatagacaaaagcaaa 242  Q
    |||||||| ||||||||||||||||||||||||||||| || | | ||| ||||||||| ||||    
T  10729444 tagactttccacccgtgctgccgcacgggtcatatacattgtagatatagtagacaaaaacaaa 10729507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 179 - 242
Target Start/End: Original strand, 16526308 - 16526371
Alignment:
Q  179 tagacttttcacccgtgctgccgcacgggtcatatacaatgcaaaaataatagacaaaagcaaa 242  Q
    |||||||| ||||||||||||||||||||||||||||| || | | ||| ||||||||| ||||    
T  16526308 tagactttccacccgtgctgccgcacgggtcatatacattgtagatatagtagacaaaaacaaa 16526371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 179 - 242
Target Start/End: Complemental strand, 20874915 - 20874852
Alignment:
Q  179 tagacttttcacccgtgctgccgcacgggtcatatacaatgcaaaaataatagacaaaagcaaa 242  Q
    |||||||| ||||||||||||||||||||||||||||| || | | ||| ||||||||| ||||    
T  20874915 tagactttccacccgtgctgccgcacgggtcatatacattgtagatatagtagacaaaaacaaa 20874852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 179 - 242
Target Start/End: Original strand, 34107340 - 34107403
Alignment:
Q  179 tagacttttcacccgtgctgccgcacgggtcatatacaatgcaaaaataatagacaaaagcaaa 242  Q
    |||||||| ||||||||||||||||||||||||||||| || | | ||| ||||||||| ||||    
T  34107340 tagactttccacccgtgctgccgcacgggtcatatacattgtagatatagtagacaaaaacaaa 34107403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 179 - 242
Target Start/End: Complemental strand, 34110879 - 34110816
Alignment:
Q  179 tagacttttcacccgtgctgccgcacgggtcatatacaatgcaaaaataatagacaaaagcaaa 242  Q
    |||||||| ||||||||||||||||||||||||||||| || | | ||| ||||||||| ||||    
T  34110879 tagactttccacccgtgctgccgcacgggtcatatacattgtagatatagtagacaaaaacaaa 34110816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 179 - 242
Target Start/End: Original strand, 38246867 - 38246930
Alignment:
Q  179 tagacttttcacccgtgctgccgcacgggtcatatacaatgcaaaaataatagacaaaagcaaa 242  Q
    |||||||| ||||||||||||||||||||||||||||| || | | ||| ||||||||| ||||    
T  38246867 tagactttccacccgtgctgccgcacgggtcatatacattgtagatatagtagacaaaaacaaa 38246930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 179 - 242
Target Start/End: Complemental strand, 40177268 - 40177205
Alignment:
Q  179 tagacttttcacccgtgctgccgcacgggtcatatacaatgcaaaaataatagacaaaagcaaa 242  Q
    |||||||| ||||||||||||||||||||||||||||| || | | ||| ||||||||| ||||    
T  40177268 tagactttccacccgtgctgccgcacgggtcatatacattgtagatatagtagacaaaaacaaa 40177205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 179 - 228
Target Start/End: Complemental strand, 19391295 - 19391246
Alignment:
Q  179 tagacttttcacccgtgctgccgcacgggtcatatacaatgcaaaaataa 228  Q
    ||||||||||| ||||||| ||||||||||||||||||||  ||||||||    
T  19391295 tagacttttcatccgtgctaccgcacgggtcatatacaattgaaaaataa 19391246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 179 - 216
Target Start/End: Original strand, 20655051 - 20655088
Alignment:
Q  179 tagacttttcacccgtgctgccgcacgggtcatataca 216  Q
    |||||||| |||||||||||||||||||||||||||||    
T  20655051 tagactttccacccgtgctgccgcacgggtcatataca 20655088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 179 - 214
Target Start/End: Original strand, 17373163 - 17373198
Alignment:
Q  179 tagacttttcacccgtgctgccgcacgggtcatata 214  Q
    |||||||| |||||||||||||||||||||||||||    
T  17373163 tagactttccacccgtgctgccgcacgggtcatata 17373198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 182 - 216
Target Start/End: Complemental strand, 33375988 - 33375954
Alignment:
Q  182 acttttcacccgtgctgccgcacgggtcatataca 216  Q
    ||||| |||||||||||||||||||||||||||||    
T  33375988 actttccacccgtgctgccgcacgggtcatataca 33375954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 188 - 221
Target Start/End: Complemental strand, 1396207 - 1396174
Alignment:
Q  188 cacccgtgctgccgcacgggtcatatacaatgca 221  Q
    ||||||||||||||||||||||||||||| ||||    
T  1396207 cacccgtgctgccgcacgggtcatatacattgca 1396174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 188 - 245
Target Start/End: Original strand, 30096287 - 30096344
Alignment:
Q  188 cacccgtgctgccgcacgggtcatatacaatgcaaaaataatagacaaaagcaaaatt 245  Q
    ||||||||||||||||||| ||||||||| || ||  ||  |||||||||||||||||    
T  30096287 cacccgtgctgccgcacggatcatatacattgtaagtattgtagacaaaagcaaaatt 30096344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 188 - 216
Target Start/End: Original strand, 25099247 - 25099275
Alignment:
Q  188 cacccgtgctgccgcacgggtcatataca 216  Q
    |||||||||||||||||||||||||||||    
T  25099247 cacccgtgctgccgcacgggtcatataca 25099275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 188 - 216
Target Start/End: Original strand, 25158337 - 25158365
Alignment:
Q  188 cacccgtgctgccgcacgggtcatataca 216  Q
    |||||||||||||||||||||||||||||    
T  25158337 cacccgtgctgccgcacgggtcatataca 25158365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0896 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: scaffold0896
Description:

Target: scaffold0896; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 188 - 245
Target Start/End: Complemental strand, 1135 - 1078
Alignment:
Q  188 cacccgtgctgccgcacgggtcatatacaatgcaaaaataatagacaaaagcaaaatt 245  Q
    ||||||||||||||||||||||||||||| || ||   || |||||||||||||||||    
T  1135 cacccgtgctgccgcacgggtcatatacattgtaagtgtagtagacaaaagcaaaatt 1078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0022 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: scaffold0022
Description:

Target: scaffold0022; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 179 - 214
Target Start/End: Original strand, 149052 - 149087
Alignment:
Q  179 tagacttttcacccgtgctgccgcacgggtcatata 214  Q
    |||||||| |||||||||||||||||||||||||||    
T  149052 tagactttccacccgtgctgccgcacgggtcatata 149087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0515 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0515
Description:

Target: scaffold0515; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 179 - 216
Target Start/End: Original strand, 6063 - 6100
Alignment:
Q  179 tagacttttcacccgtgctgccgcacgggtcatataca 216  Q
    |||| ||| |||||||||||||||||||||||||||||    
T  6063 tagattttccacccgtgctgccgcacgggtcatataca 6100  T

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Target: scaffold0306 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0306
Description:

Target: scaffold0306; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 179 - 216
Target Start/End: Original strand, 6073 - 6110
Alignment:
Q  179 tagacttttcacccgtgctgccgcacgggtcatataca 216  Q
    |||| ||| |||||||||||||||||||||||||||||    
T  6073 tagattttccacccgtgctgccgcacgggtcatataca 6110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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