View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3218_low_14 (Length: 338)
Name: NF3218_low_14
Description: NF3218
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3218_low_14 |
 | |
|
| [»] chr4 (1 HSPs) |
| |
|
Alignment Details
Target: chr4 (Bit Score: 324; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 324; E-Value: 0
Query Start/End: Original strand, 11 - 338
Target Start/End: Complemental strand, 53332292 - 53331965
Alignment:
| Q |
11 |
cacagagaacttattttcattggctacttaacttgatgacaacatcaactctataaaccaagcatctcttctataacatatacaagactaacgttaagga |
110 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
53332292 |
cacagagaacttattttcattggctacttaacttgatgacaacatcaactctataaaccaagcatctcttctataacatatacaagactaacgttaagga |
53332193 |
T |
|
| Q |
111 |
aggccataaccatcatgaaactaatgtgtcattgtttagtagagttaaagataagtcatcaagagcaactatctccaattttcggtttttccttttggtc |
210 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
53332192 |
aggccataaccatcatgaaactaatgtgtcattgtttagtagagttaaagataagtcgtcaagagcaactatctccaattttcggtttttccttttggtc |
53332093 |
T |
|
| Q |
211 |
cagaatatcctaatttttgcttgtacttcacttaaagcatgcgccgccttaggacccagggaaacccatgaactcaaaaacatttcttacccgaacaaat |
310 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
53332092 |
cagaatatcctaatttttgcttgtacttcacttaaagcatgcgccgccttaggacccagggaaacccatgaactcaaaaacatttcttacccgaacaaat |
53331993 |
T |
|
| Q |
311 |
ctcaatgcaatcaaagtggctaaaaact |
338 |
Q |
| |
|
|||||||||||||||||||||||||||| |
|
|
| T |
53331992 |
ctcaatgcaatcaaagtggctaaaaact |
53331965 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University