View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3218_low_15 (Length: 338)
Name: NF3218_low_15
Description: NF3218
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3218_low_15 |
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Alignment Details
Target: chr8 (Bit Score: 236; Significance: 1e-130; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 12 - 322
Target Start/End: Complemental strand, 31733989 - 31733677
Alignment:
| Q |
12 |
atgggacggagggggtatgttcaaaagagttaaaataattatgtaagtgtgtgggnnnnnnntgaaaaggcacgaaagaagtgtttcactgcttttctta |
111 |
Q |
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| T |
31733989 |
atgggacggagttggtatgttcaaaagagttaccataattatgtaagtgtgtgggaaaaaaatgaaaacgcacgaaagaagtgtttcagtgcttttctta |
31733890 |
T |
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| Q |
112 |
gaagttagaactcagagctagaagcttcgagttggacattaattttgattttcagaagnnnnnnngtttcaccattaa--gagtttcttccatcatcata |
209 |
Q |
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| T |
31733889 |
gaagttagaactcagagctagaagcttcgagttggacattaattttgattttcagaagtttttttgtttcaccattaaaagagtttcttccatcatcata |
31733790 |
T |
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| Q |
210 |
acatcctttagatatcatcatggatgtattctctttctgtcattcgtcgtaggtttcactgacatacattggttttaatgtcatcattacaagataacaa |
309 |
Q |
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| T |
31733789 |
acatcctttagatatcatcatggatgtattctctttctgtcattcgtcgtaggtttcactgacatacattggttttaatgtcatcattacaagataacaa |
31733690 |
T |
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| Q |
310 |
aaatgacaccaac |
322 |
Q |
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| T |
31733689 |
aaatgacaccaac |
31733677 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 91; Significance: 5e-44; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 178 - 322
Target Start/End: Original strand, 32848356 - 32848497
Alignment:
| Q |
178 |
tttcaccattaagagtttcttccatcatcataacatcctttagatatcatcatggatgtattctctttctgtcattcgtcgtaggtttcactgacataca |
277 |
Q |
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| T |
32848356 |
tttcaccattaagagttccttccatcatcagaacatcctttagatatcatcatggatgttttctctctccttcattcgt---atatttcaccgacatgca |
32848452 |
T |
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| Q |
278 |
ttggttttaatgtcatcattacaagataacaaaaatgacaccaac |
322 |
Q |
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| T |
32848453 |
ttggttttaatgtcatcattacaagataacaaaaatgacaccaac |
32848497 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 26 - 117
Target Start/End: Original strand, 32848078 - 32848169
Alignment:
| Q |
26 |
gtatgttcaaaagagttaaaataattatgtaagtgtgtgggnnnnnnntgaaaaggcacgaaagaagtgtttcactgcttttcttagaagtt |
117 |
Q |
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||||| |||||||| ||| || || ||||||||||||||| ||||||| ||||||||| ||||||||||||||||||||||||| |
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| T |
32848078 |
gtatgctcaaaagaattacaacgatcatgtaagtgtgtgggacaaaaatgaaaagccacgaaagagttgtttcactgcttttcttagaagtt |
32848169 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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