View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3218_low_16 (Length: 328)
Name: NF3218_low_16
Description: NF3218
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3218_low_16 |
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Alignment Details
Target: chr1 (Bit Score: 238; Significance: 1e-132; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 1 - 312
Target Start/End: Complemental strand, 3483969 - 3483662
Alignment:
| Q |
1 |
ctttgtttttcgataaataagaatattgctttaataatagtccattttacaaccaaatatttatgatgatacaatacattatttaagctactttgtcaaa |
100 |
Q |
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| T |
3483969 |
ctttgtttttcgataaataagaatattgctttaataatagtccattttacaaccaaatatttatgatgatacaatacattatttaagctactttgtcaaa |
3483870 |
T |
|
| Q |
101 |
tttctctaatggagnnnnnnnnnnnnnnnnnncatgctcatctttaatgaaactcacttaaatagactttcattggagaagctcctagtgaatttcaaga |
200 |
Q |
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|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3483869 |
tttctctaatggagaaaaaaaattaaaaaa--catgctcatctttaatgaaactcacttaaatagactttcattggagaagctcctagtgaatttcaaga |
3483772 |
T |
|
| Q |
201 |
cacgccatgacaaatctcttaagtggatacacaccaaatctcttaagtgaatgttaccttgaatcacactcttactagttatgaaaatactaagtgactt |
300 |
Q |
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||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3483771 |
cacgccaggacaaatctcttaagtggat--acaccaaatctcttaagtgaatgttaccttgaatcacactcttactagttatgaaaatactaagtgactt |
3483674 |
T |
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| Q |
301 |
ctcaacgtattt |
312 |
Q |
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|||||||||||| |
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| T |
3483673 |
ctcaacgtattt |
3483662 |
T |
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