View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3218_low_19 (Length: 307)
Name: NF3218_low_19
Description: NF3218
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3218_low_19 |
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| [»] chr3 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 200; Significance: 1e-109; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 17 - 307
Target Start/End: Original strand, 1726397 - 1726687
Alignment:
| Q |
17 |
cattgagaatctaataagttatctcaactgtcatgagatggagcttgttggagatgaacccgctaagggaaatctactaagctcttcaagttgttgagtc |
116 |
Q |
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| T |
1726397 |
cattgagaatctaataagttacctcaagtatcatgagatggagcttgttggagatgaatccgctaagggaaatctactaagctcttcaagttgttgagtc |
1726496 |
T |
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| Q |
117 |
agaagagactctagatggagaatctgaagatgggttagatgctgaagagatgacatttctgaccaaaatatttaagtaccttaccaagaagaaaaatgtt |
216 |
Q |
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| T |
1726497 |
agaagagactctagatggagaatctgaagatgggttagatgctga---------atttctgaccaaaatattcaagtaccttaccaagaagaaaaatgtt |
1726587 |
T |
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| Q |
217 |
tccaactagaactagtggatctaaaggatcaggctac---------aaggatgattagaagggttgcttcaacagcaagaaacatgatcacttcattgct |
307 |
Q |
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| T |
1726588 |
tccaactagaactagtggatctaaaggatcagactacaaggatgagaaggatgattagaagggtttcttcaacagcaagaaacctggtcacttcattgct |
1726687 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 21 - 83
Target Start/End: Original strand, 13293218 - 13293280
Alignment:
| Q |
21 |
gagaatctaataagttatctcaactgtcatgagatggagcttgttggagatgaacccgctaag |
83 |
Q |
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| T |
13293218 |
gagaatctgataagctccctcaaatatcatgagattgagcttgttggagatgaacctgctaag |
13293280 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 131 - 203
Target Start/End: Complemental strand, 17235888 - 17235817
Alignment:
| Q |
131 |
atggagaatctgaagatgggttagatgctgaagagatgacatttctgaccaaaatatttaagtaccttaccaa |
203 |
Q |
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| T |
17235888 |
atggagaatctgaagatga-ttagatgctaaagagatgacatttctgaccaaaagatatcagtacctgaccaa |
17235817 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 247 - 304
Target Start/End: Complemental strand, 4447479 - 4447422
Alignment:
| Q |
247 |
aggctacaaggatgattagaagggttgcttcaacagcaagaaacatgatcacttcatt |
304 |
Q |
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| T |
4447479 |
aggctagaaagataatcagaagggatgcttcaactgcaagaaacctgatcacttcatt |
4447422 |
T |
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