View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3218_low_21 (Length: 282)
Name: NF3218_low_21
Description: NF3218
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3218_low_21 |
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Alignment Details
Target: chr7 (Bit Score: 125; Significance: 2e-64; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 138 - 266
Target Start/End: Complemental strand, 24017248 - 24017120
Alignment:
| Q |
138 |
caatactgctcatacgtgaagacaatgaattcaatatacgtttgcttatacatgtcactaacttgtcatgcatggttttatttgataaatataaaattaa |
237 |
Q |
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| T |
24017248 |
caatactgctcatacgtgaagacaatgaattcaatatacgtttgcttatacatgtcactaacttgtcaagcatggttttatttgataaatataaaattaa |
24017149 |
T |
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| Q |
238 |
aacgaattcattcaatccagtaaacaaag |
266 |
Q |
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| T |
24017148 |
aacgaattcattcaatccagtaaacaaag |
24017120 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 19 - 78
Target Start/End: Complemental strand, 24017367 - 24017308
Alignment:
| Q |
19 |
gattttcctcttccttgtatctccaactccatttgaaatttcacttctatcccctataat |
78 |
Q |
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| T |
24017367 |
gattttcctcttccttgtatctccaactccatttgaaatttcacttctatcccctataat |
24017308 |
T |
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