View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3218_low_24 (Length: 259)
Name: NF3218_low_24
Description: NF3218
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3218_low_24 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 211; Significance: 1e-116; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 15 - 241
Target Start/End: Complemental strand, 1702342 - 1702116
Alignment:
| Q |
15 |
agcacagatatccaaagactccaagattaagataattaggagtggaaccaaacagaatttcattaggacatttgtttttaagatgtgttgttgtcatgcg |
114 |
Q |
| |
|
|||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||| |
|
|
| T |
1702342 |
agcacagacatccaaagactcgaagattaagataattaggagtggaaccaaacagaatttcatgaggacatttgtttttaagatgtgttgttggcatgcg |
1702243 |
T |
|
| Q |
115 |
atttattaaatacaccgccatttggaaggcataacaccagaatttttgtggaacatgagagtgagacatgagggtgagcgatgtttctactatatgacga |
214 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1702242 |
atttattaaatacaccgccatttggaaggcataacaccagaatttttgtggaacatgagagtgagacatgagggtgagcgatgtttctactatatgacga |
1702143 |
T |
|
| Q |
215 |
tgtttgcgttctgcaataccaatatgt |
241 |
Q |
| |
|
||||||||||||||||||||||||||| |
|
|
| T |
1702142 |
tgtttgcgttctgcaataccaatatgt |
1702116 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 131 - 237
Target Start/End: Complemental strand, 5400962 - 5400856
Alignment:
| Q |
131 |
gccatttggaaggcataacaccagaatttttgtggaacatgagagtgagacatgagggtgagcgatgtttctactatatgacgatgtttgcgttctgcaa |
230 |
Q |
| |
|
|||||||| || ||||||||||||||| |||| || ||| ||||||||| | || ||||| | |||||||||||||| || ||||||||||| |||| |
|
|
| T |
5400962 |
gccatttgaaaagcataacaccagaatgtttgaggtacagaagagtgagagagaagtgtgagagcagtttctactatatggcggtgtttgcgttcagcaa |
5400863 |
T |
|
| Q |
231 |
taccaat |
237 |
Q |
| |
|
| ||||| |
|
|
| T |
5400862 |
tgccaat |
5400856 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 131 - 237
Target Start/End: Complemental strand, 3541937 - 3541831
Alignment:
| Q |
131 |
gccatttggaaggcataacaccagaatttttgtggaacatgagagtgagacatgagggtgagcgatgtttctactatatgacgatgtttgcgttctgcaa |
230 |
Q |
| |
|
|||||||| || ||||||||||||||| |||| || ||| ||||||||| | || ||||| | |||||||||||||| || ||||||||||| |||| |
|
|
| T |
3541937 |
gccatttgaaaagcataacaccagaatgtttgaggtacagaagagtgagagagaagtgtgagagcagtttctactatatggcggtgtttgcgttcagcaa |
3541838 |
T |
|
| Q |
231 |
taccaat |
237 |
Q |
| |
|
| ||||| |
|
|
| T |
3541837 |
tgccaat |
3541831 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 197 - 241
Target Start/End: Original strand, 26592278 - 26592322
Alignment:
| Q |
197 |
gtttctactatatgacgatgtttgcgttctgcaataccaatatgt |
241 |
Q |
| |
|
||||| |||||||| | |||||||||||||||||| ||||||||| |
|
|
| T |
26592278 |
gtttcgactatatggcaatgtttgcgttctgcaatgccaatatgt |
26592322 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University