View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3218_low_28 (Length: 251)
Name: NF3218_low_28
Description: NF3218
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3218_low_28 |
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Alignment Details
Target: chr6 (Bit Score: 243; Significance: 1e-135; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 243; E-Value: 1e-135
Query Start/End: Original strand, 1 - 243
Target Start/End: Complemental strand, 33558141 - 33557899
Alignment:
| Q |
1 |
caaagccattgagatgagtgtagcaagaacaagagcaacacttgtaataacagatgaatatagagatgcaccagagccaaatccaattgtttggaaaata |
100 |
Q |
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| T |
33558141 |
caaagccattgagatgagtgtagcaagaacaagagcaacacttgtaataacagatgaatatagagatgcaccagagccaaatccaattgtttggaaaata |
33558042 |
T |
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| Q |
101 |
acaggagcatagaatagaatagagttgtttccagtaagttgttgaaatgctggaatacaaattgcaccaatgatgaattgaggtctattctttctcaaaa |
200 |
Q |
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| T |
33558041 |
acaggagcatagaatagaatagagttgtttccagtaagttgttgaaatgctggaatacaaattgcaccaatgatgaattgaggtctattctttctcaaaa |
33557942 |
T |
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| Q |
201 |
ggagattctgaaatggattcttaatagattttgcttctctgct |
243 |
Q |
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| T |
33557941 |
ggagattctgaaatggattcttaatagattttgcttctctgct |
33557899 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 1 - 243
Target Start/End: Complemental strand, 33565358 - 33565116
Alignment:
| Q |
1 |
caaagccattgagatgagtgtagcaagaacaagagcaacacttgtaataacagatgaatatagagatgcaccagagccaaatccaattgtttggaaaata |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
33565358 |
caaagccattgagatgagtgtagcaagaacaagagcaacacttgtaataacagatgaatatagagatgccccagagccaaatccaattgtttggaaaata |
33565259 |
T |
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| Q |
101 |
acaggagcatagaatagaatagagttgtttccagtaagttgttgaaatgctggaatacaaattgcaccaatgatgaattgaggtctattctttctcaaaa |
200 |
Q |
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| T |
33565258 |
acaggagcatagaatagaatagagttgtttccagtaagttgttgaaatgctggaatacaaattgcaccaatgatgaattgaggtctattctttctcaaaa |
33565159 |
T |
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| Q |
201 |
ggagattctgaaatggattcttaatagattttgcttctctgct |
243 |
Q |
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| T |
33565158 |
ggagattctgaaatggattcttaatagattttgcttctctgct |
33565116 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 81; Significance: 3e-38; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 23 - 243
Target Start/End: Complemental strand, 43380485 - 43380265
Alignment:
| Q |
23 |
gcaagaacaagagcaacacttgtaataacagatgaatatagagatgcaccagagccaaatccaattgtttggaaaataacaggagcatagaatagaatag |
122 |
Q |
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||||||||||| |||| ||| || || ||||| ||||| ||||||||| |||| |||||||||| |||||||||| ||||| |||||||| || || | |
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| T |
43380485 |
gcaagaacaagtgcaatactagtgatgacagaagaataaagagatgcagcagatccaaatccaagagtttggaaaaggacaggtgcatagaagaggatgg |
43380386 |
T |
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| Q |
123 |
agttgtttccagtaagttgttgaaatgctggaatacaaattgcaccaatgatgaattgaggtctattctttctcaaaaggagattctgaaatggattctt |
222 |
Q |
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||||||||||||| |||||||| ||||| |||||| | ||||||||| | ||||| |||||||||||||| ||||| || ||||||||||||||||| |
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| T |
43380385 |
agttgtttccagtcagttgttggaatgcaggaatagccaatgcaccaattacaaattgtggtctattctttcttaaaagaaggttctgaaatggattctt |
43380286 |
T |
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| Q |
223 |
aatagattttgcttctctgct |
243 |
Q |
| |
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|| | || |||||||||||| |
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| T |
43380285 |
gatggcttgtgcttctctgct |
43380265 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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