View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3218_low_30 (Length: 249)
Name: NF3218_low_30
Description: NF3218
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3218_low_30 |
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| [»] chr7 (2 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 187; Significance: 1e-101; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 10 - 249
Target Start/End: Complemental strand, 24017688 - 24017451
Alignment:
| Q |
10 |
aagaatatgatcaaacttcaaaactaatggctttgacttttcagcagaaaagacttttaaaacacacatttttaagtcaaacagttaatgaaaaattccc |
109 |
Q |
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| T |
24017688 |
aagaacatgatcaaacttcaaaactaatggctttgacttttcagcagaaaagacttttaaaacacacatttttaagtcaaacagttaatgaaaaaatccc |
24017589 |
T |
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| Q |
110 |
acatactgatatatcatatgtaagaatatgatagttcatatatgaatatcaaagt-attcaaatccaaatcatcataaaacaaaattacaaaaacattgg |
208 |
Q |
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| T |
24017588 |
acatactgatatatcatatgtaag---atgatagttcatatatgaacatcaatgtaattcaaatccaaatcatcataaaacaaaattacaaaaacattgg |
24017492 |
T |
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| Q |
209 |
cttcctagacaaagatcagattatcaacccttcttcacaat |
249 |
Q |
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| T |
24017491 |
ctacctagaaaaagatcagattattatcccttcttcacaat |
24017451 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 147 - 192
Target Start/End: Complemental strand, 26231358 - 26231312
Alignment:
| Q |
147 |
atatatgaatatcaaagta-ttcaaatccaaatcatcataaaacaaa |
192 |
Q |
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| T |
26231358 |
atatatgaatatcaaaataattcaaatccaagtcatcataaaacaaa |
26231312 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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