View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3218_low_32 (Length: 245)
Name: NF3218_low_32
Description: NF3218
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3218_low_32 |
 | |
|
| [»] chr4 (1 HSPs) |
| |
|
Alignment Details
Target: chr4 (Bit Score: 149; Significance: 8e-79; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 149; E-Value: 8e-79
Query Start/End: Original strand, 19 - 245
Target Start/End: Original strand, 51985794 - 51986021
Alignment:
| Q |
19 |
gtcaaaactatacaaattattaacatgttttacactcttctatcaaaaaaacaaaacatgttttacactcctaactaaactttgttttnnnnnnnnnnnt |
118 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
51985794 |
gtcaaaactataaaaattattaacatgttttacactcttctgtcaaaaaaacaaaacatgttttacactcctaactaaactttgttttaaaaaaagaaat |
51985893 |
T |
|
| Q |
119 |
acaaattatt--aacatatttaacactctactaactaaactaaccgaatttcattttgtccactaattagtccgccccgtataacaagctatatctcttt |
216 |
Q |
| |
|
| ||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| | |||||| |
|
|
| T |
51985894 |
ataaatttttttaacatatttaacactctactaactaaactaaccgaatttcattttgtccactaattagtccgccctgtataacaagctacacctcttt |
51985993 |
T |
|
| Q |
217 |
ctaacactttttatcatcgaactttcttc |
245 |
Q |
| |
|
||||||| ||||||||||||||||||||| |
|
|
| T |
51985994 |
ctaacac-ttttatcatcgaactttcttc |
51986021 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University