View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3218_low_33 (Length: 242)

Name: NF3218_low_33
Description: NF3218
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3218_low_33
NF3218_low_33
[»] chr7 (4 HSPs)
chr7 (1-235)||(4300714-4300948)
chr7 (1-117)||(4300949-4301065)
chr7 (147-230)||(1366914-1366997)
chr7 (1-37)||(45962504-45962540)
[»] chr2 (4 HSPs)
chr2 (105-230)||(27955862-27955987)
chr2 (105-230)||(33054120-33054246)
chr2 (105-230)||(31634369-31634489)
chr2 (105-179)||(33051878-33051952)
[»] chr8 (7 HSPs)
chr8 (105-230)||(42890655-42890780)
chr8 (106-230)||(42891378-42891499)
chr8 (105-226)||(23570757-23570878)
chr8 (105-230)||(18180395-18180519)
chr8 (105-201)||(26375187-26375283)
chr8 (107-192)||(5646753-5646838)
chr8 (1-61)||(23571181-23571241)
[»] chr6 (4 HSPs)
chr6 (105-230)||(18717899-18718024)
chr6 (105-226)||(24442750-24442871)
chr6 (105-230)||(8048648-8048771)
chr6 (147-229)||(14238737-14238819)
[»] chr1 (2 HSPs)
chr1 (105-230)||(13443671-13443796)
chr1 (106-226)||(23987861-23987981)
[»] chr5 (1 HSPs)
chr5 (142-205)||(19497024-19497087)
[»] chr4 (1 HSPs)
chr4 (159-226)||(22691489-22691556)
[»] chr3 (2 HSPs)
chr3 (159-217)||(368611-368669)
chr3 (194-230)||(3068663-3068699)


Alignment Details
Target: chr7 (Bit Score: 223; Significance: 1e-123; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 1 - 235
Target Start/End: Complemental strand, 4300948 - 4300714
Alignment:
Q  1 gttagtggaaagccatcgtctatcatctcatccaacaaatcagtctactccacactaacaatatgtatcggtgactgaacatattaggagactgatttgt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4300948 gttagtggaaagccatcgtctatcatctcatccaacaaatcagtctactccacactaacaatatgtatcggtgactgaacatattaggagactgatttgt 4300849  T
Q  101 cgcggctcatagtattccaaatcagattcattggcatattttgatgttcggtacgtaacaatagtatggttgttattacaaatcctaataaccggaattg 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||    
T  4300848 cgcggctcatagtattccaaatcagattcattggcatattttgatgttcggtacgtaacaatagtatggttgttattacaaaccctaataatcggaattg 4300749  T
Q  201 gttcttctcctctgttcggattgtttctgtctctg 235  Q
    |||||||||||||||||||||||||||||| ||||    
T  4300748 gttcttctcctctgttcggattgtttctgtttctg 4300714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 1 - 117
Target Start/End: Complemental strand, 4301065 - 4300949
Alignment:
Q  1 gttagtggaaagccatcgtctatcatctcatccaacaaatcagtctactccacactaacaatatgtatcggtgactgaacatattaggagactgatttgt 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||| ||||||||||||||||||||||||    
T  4301065 gttagtggaaagccatcgtctatcatctcatccaacaaatcagtctcctccacactaacaatatgtatcagtgaccgaacatattaggagactgatttgt 4300966  T
Q  101 cgcggctcatagtattc 117  Q
    ||||| |||||||||||    
T  4300965 cgcggatcatagtattc 4300949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 147 - 230
Target Start/End: Complemental strand, 1366997 - 1366914
Alignment:
Q  147 ttcggtacgtaacaatagtatggttgttattacaaatcctaataaccggaattggttcttctcctctgttcggattgtttctgt 230  Q
    |||| ||| |||||||| ||||||||||||||| || ||||||||||||||||| | || |||||||||||||||  |||||||    
T  1366997 ttcgatacataacaataatatggttgttattacgaaccctaataaccggaattgatcctcctcctctgttcggatcatttctgt 1366914  T

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Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 45962540 - 45962504
Alignment:
Q  1 gttagtggaaagccatcgtctatcatctcatccaaca 37  Q
    |||||||||||||||| ||||||||||||||||||||    
T  45962540 gttagtggaaagccattgtctatcatctcatccaaca 45962504  T

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Target: chr2 (Bit Score: 94; Significance: 5e-46; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 105 - 230
Target Start/End: Original strand, 27955862 - 27955987
Alignment:
Q  105 gctcatagtattccaaatcagattcattggcatattttgatgttcggtacgtaacaatagtatggttgttattacaaatcctaataaccggaattggttc 204  Q
    |||||||||||||||||||||||||||||  |||||||||| |||||||||||||||||||| || |||||||||||| ||||||||| |||||||||||    
T  27955862 gctcatagtattccaaatcagattcattgctatattttgattttcggtacgtaacaatagtagggatgttattacaaaccctaataactggaattggttc 27955961  T
Q  205 ttctcctctgttcggattgtttctgt 230  Q
    | ||||||||||||||||||||||||    
T  27955962 tcctcctctgttcggattgtttctgt 27955987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 105 - 230
Target Start/End: Original strand, 33054120 - 33054246
Alignment:
Q  105 gctcatagtattccaaa-tcagattcattggcatattttgatgttcggtacgtaacaatagtatggttgttattacaaatcctaataaccggaattggtt 203  Q
    ||||||||||||||||| | |||||||   | || || |||| |||||||||||||||||||||| |||||||||| || |||||||||| ||||||||     
T  33054120 gctcatagtattccaaaattagattcacgagtatgttctgattttcggtacgtaacaatagtatgattgttattacgaaccctaataaccagaattggtc 33054219  T
Q  204 cttctcctctgttcggattgtttctgt 230  Q
     | ||||||||||||| ||||||||||    
T  33054220 atcctcctctgttcgggttgtttctgt 33054246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 105 - 230
Target Start/End: Complemental strand, 31634489 - 31634369
Alignment:
Q  105 gctcatagtattccaaatcagattcattggcatattttgatgttcggtacgtaacaatagtatggttgttattacaaatcctaataaccggaattggttc 204  Q
    ||||||||||||||||||| |||||||||   ||||||||| ||||||||||||     ||| || |||| ||||||| ||||||||| |||||||||||    
T  31634489 gctcatagtattccaaatctgattcattgctgtattttgattttcggtacgtaa-----gtagggatgtttttacaaaccctaataactggaattggttc 31634395  T
Q  205 ttctcctctgttcggattgtttctgt 230  Q
       |||||||||||||||||||||||    
T  31634394 ccatcctctgttcggattgtttctgt 31634369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 105 - 179
Target Start/End: Complemental strand, 33051952 - 33051878
Alignment:
Q  105 gctcatagtattccaaatcagattcattggcatattttgatgttcggtacgtaacaatagtatggttgttattac 179  Q
    ||||||||||||||||||||||| ||  |  || || |||| |||||||||||||||||||||||||||||||||    
T  33051952 gctcatagtattccaaatcagatccacggatatgttctgattttcggtacgtaacaatagtatggttgttattac 33051878  T

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Target: chr8 (Bit Score: 90; Significance: 1e-43; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 105 - 230
Target Start/End: Complemental strand, 42890780 - 42890655
Alignment:
Q  105 gctcatagtattccaaatcagattcattggcatattttgatgttcggtacgtaacaatagtatggttgttattacaaatcctaataaccggaattggttc 204  Q
    ||||||| ||||||||||||||||||| |||||||||| || ||||||||||||||||| || || |||||||||||| |||||||||||||||||||||    
T  42890780 gctcataatattccaaatcagattcatcggcatattttaattttcggtacgtaacaataatagggatgttattacaaaccctaataaccggaattggttc 42890681  T
Q  205 ttctcctctgttcggattgtttctgt 230  Q
    | ||||||||||||||||||||||||    
T  42890680 tcctcctctgttcggattgtttctgt 42890655  T

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Target: chr8; HSP #2
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 106 - 230
Target Start/End: Original strand, 42891378 - 42891499
Alignment:
Q  106 ctcatagtattccaaatcagattcattggcatattttgatgttcggtacgtaacaatagtatggttgttattacaaatcctaataaccggaattggttct 205  Q
    |||||| ||||||||||||||||||||| ||||||||||| ||||||||||||||||| || || |||||||||||| ||||||||||||||||||   |    
T  42891378 ctcataatattccaaatcagattcattgacatattttgattttcggtacgtaacaataatagggatgttattacaaaccctaataaccggaattgg---t 42891474  T
Q  206 tctcctctgttcggattgtttctgt 230  Q
    |||||||||||||||||||||||||    
T  42891475 tctcctctgttcggattgtttctgt 42891499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 105 - 226
Target Start/End: Complemental strand, 23570878 - 23570757
Alignment:
Q  105 gctcatagtattccaaatcagattcattggcatattttgatgttcggtacgtaacaatagtatggttgttattacaaatcctaataaccggaattggttc 204  Q
    |||||||||||||||||||||||||||||  |||||| ||| ||||||||||||||||| || || ||||||||| ||  || |||||  ||||||||||    
T  23570878 gctcatagtattccaaatcagattcattgctatatttggattttcggtacgtaacaataatagggatgttattacgaactctgataacttgaattggttc 23570779  T
Q  205 ttctcctctgttcggattgttt 226  Q
    | ||||||||||| ||||||||    
T  23570778 tcctcctctgttcagattgttt 23570757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 105 - 230
Target Start/End: Original strand, 18180395 - 18180519
Alignment:
Q  105 gctcatagtattccaaatcagattcattggcatattttgatgttcggtacgtaacaatagtatggttgttattacaaatcctaataaccggaattggttc 204  Q
    ||||| ||||||||||||||||||||  || || || |||| |||| ||| ||||||||||| |||||||||||| || ||||||||||| |||||||||    
T  18180395 gctcacagtattccaaatcagattcac-ggtatgttctgattttcgctacataacaatagtagggttgttattacgaaccctaataaccgaaattggttc 18180493  T
Q  205 ttctcctctgttcggattgtttctgt 230  Q
    | |||  ||||||||||| |||||||    
T  18180494 tcctctcctgttcggattttttctgt 18180519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 105 - 201
Target Start/End: Complemental strand, 26375283 - 26375187
Alignment:
Q  105 gctcatagtattccaaatcagattcattggcatattttgatgttcggtacgtaacaatagtatggttgttattacaaatcctaataaccggaattgg 201  Q
    |||||||||||| |||||||||||||  |  || || | || |||||||| ||||||||||| |||||||||||| || |||| |||||||||||||    
T  26375283 gctcatagtattacaaatcagattcacggatatgttctaattttcggtacataacaatagtagggttgttattacgaaccctactaaccggaattgg 26375187  T

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Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 107 - 192
Target Start/End: Original strand, 5646753 - 5646838
Alignment:
Q  107 tcatagtattccaaatcagattcattggcatattttgatgttcggtacgtaacaatagtatggttgttattacaaatcctaataac 192  Q
    |||||||| ||||||||||||| |  || || |||| || ||| |||||||  | |||||||||||||||||| || |||||||||    
T  5646753 tcatagtactccaaatcagatttacaggtatgttttaattttctgtacgtataagtagtatggttgttattacgaaccctaataac 5646838  T

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Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 61
Target Start/End: Complemental strand, 23571241 - 23571181
Alignment:
Q  1 gttagtggaaagccatcgtctatcatctcatccaacaaatcagtctactccacactaacaa 61  Q
    |||||||||||| | | ||||| ||| ||||||||||||||||||| ||||| || |||||    
T  23571241 gttagtggaaagtcgttgtctaacatatcatccaacaaatcagtcttctccatacaaacaa 23571181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 78; Significance: 2e-36; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 105 - 230
Target Start/End: Original strand, 18717899 - 18718024
Alignment:
Q  105 gctcatagtattccaaatcagattcattggcatattttgatgttcggtacgtaacaatagtatggttgttattacaaatcctaataaccggaattggttc 204  Q
    ||||||||||||||||||||||| ||| || || ||||||| |||||||||||||||||||  || |||||||||||| |||||||||||||||| ||||    
T  18717899 gctcatagtattccaaatcagatacataggtatgttttgattttcggtacgtaacaatagttgggatgttattacaaaccctaataaccggaattagttc 18717998  T
Q  205 ttctcctctgttcggattgtttctgt 230  Q
    | ||||||||||| ||||||||||||    
T  18717999 tactcctctgttcagattgtttctgt 18718024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 105 - 226
Target Start/End: Original strand, 24442750 - 24442871
Alignment:
Q  105 gctcatagtattccaaatcagattcattggcatattttgatgttcggtacgtaacaatagtatggttgttattacaaatcctaataaccggaattggttc 204  Q
    ||||||||||||||||||||||||||| || ||||| |||| |||||||||||||||||||||||||||||| |  || ||||||||||||||||| | |    
T  24442750 gctcatagtattccaaatcagattcatgggtatattctgattttcggtacgtaacaatagtatggttgttataatgaaccctaataaccggaattgatcc 24442849  T
Q  205 ttctcctctgttcggattgttt 226  Q
    | |||| || ||| ||||||||    
T  24442850 tcctcccctattcagattgttt 24442871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 105 - 230
Target Start/End: Original strand, 8048648 - 8048771
Alignment:
Q  105 gctcatagtattccaaatcagattcattggcatattttgatgttcggtacgtaacaatagtatggttgttattac-aaatcctaataaccggaattggtt 203  Q
    ||||||||||||||||||||||||||  || || || |||| || ||||||||||||||||||| || ||||||| ||  |||||||| |||||||||      
T  8048648 gctcatagtattccaaatcagattcacaggtatgttctgatttttggtacgtaacaatagtatgttttttattacgaaggcctaataatcggaattgg-- 8048745  T
Q  204 cttctcctctgttcggattgtttctgt 230  Q
     | ||||| ||||||||||||||||||    
T  8048746 -tcctcctatgttcggattgtttctgt 8048771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 147 - 229
Target Start/End: Complemental strand, 14238819 - 14238737
Alignment:
Q  147 ttcggtacgtaacaatagtatggttgttattacaaatcctaataaccggaattggttcttctcctctgttcggattgtttctg 229  Q
    |||| |||||||||||||||||| ||||| | | || | |||||||||||||||||| | |||| | |||||||||| |||||    
T  14238819 ttcgatacgtaacaatagtatggatgttaatgcgaaccttaataaccggaattggttatcctcccccgttcggattgattctg 14238737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 78; Significance: 2e-36; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 105 - 230
Target Start/End: Original strand, 13443671 - 13443796
Alignment:
Q  105 gctcatagtattccaaatcagattcattggcatattttgatgttcggtacgtaacaatagtatggttgttattacaaatcctaataaccggaattggttc 204  Q
    ||||||| |||||||||||||||  |||||||||||||||| ||||||||||||||| |||| || |||||||||||| ||||||| | |||||||||||    
T  13443671 gctcataatattccaaatcagatgaattggcatattttgattttcggtacgtaacaacagtagggatgttattacaaaccctaatagctggaattggttc 13443770  T
Q  205 ttctcctctgttcggattgtttctgt 230  Q
    | |||||| |||||||||||||||||    
T  13443771 tcctcctccgttcggattgtttctgt 13443796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 106 - 226
Target Start/End: Complemental strand, 23987981 - 23987861
Alignment:
Q  106 ctcatagtattccaaatcagattcattggcatattttgatgttcggtacgtaacaatagtatggttgttattacaaatcctaataaccggaattggttct 205  Q
    |||||||||||||| ||||||||||| || ||||| |||| |||||||| || |||||||||| |||||||||  || |||||||||| ||||||||  |    
T  23987981 ctcatagtattccagatcagattcataggtatattctgattttcggtacatatcaatagtatgattgttattaagaaccctaataaccagaattggtcat 23987882  T
Q  206 tctcctctgttcggattgttt 226  Q
     || |||||||||||||||||    
T  23987881 ccttctctgttcggattgttt 23987861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 142 - 205
Target Start/End: Original strand, 19497024 - 19497087
Alignment:
Q  142 tgatgttcggtacgtaacaatagtatggttgttattacaaatcctaataaccggaattggttct 205  Q
    |||| |||||||| |||||||||||||||||||||||| || ||||||||| ||||||||||||    
T  19497024 tgattttcggtacataacaatagtatggttgttattacgaaccctaataactggaattggttct 19497087  T

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Target: chr4 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 159 - 226
Target Start/End: Complemental strand, 22691556 - 22691489
Alignment:
Q  159 caatagtatggttgttattacaaatcctaataaccggaattggttcttctcctctgttcggattgttt 226  Q
    ||||||| || |||||||||| || ||||||||||||||||| |||| |||  |||||| ||||||||    
T  22691556 caatagtctgattgttattacgaaccctaataaccggaattgattctcctctcctgttcagattgttt 22691489  T

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Target: chr3 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 159 - 217
Target Start/End: Original strand, 368611 - 368669
Alignment:
Q  159 caatagtatggttgttattacaaatcctaataaccggaattggttcttctcctctgttc 217  Q
    ||||||| || ||||||||||||| ||||||||  ||||||||| ||||||| ||||||    
T  368611 caatagtctgattgttattacaaaccctaataattggaattggtacttctcccctgttc 368669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 194 - 230
Target Start/End: Original strand, 3068663 - 3068699
Alignment:
Q  194 ggaattggttcttctcctctgttcggattgtttctgt 230  Q
    |||||||||||| |||||||| |||||||||||||||    
T  3068663 ggaattggttctcctcctctgctcggattgtttctgt 3068699  T

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