View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3218_low_37 (Length: 238)

Name: NF3218_low_37
Description: NF3218
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3218_low_37
NF3218_low_37
[»] chr4 (5 HSPs)
chr4 (1-204)||(22337136-22337339)
chr4 (8-199)||(2488242-2488433)
chr4 (19-166)||(13956651-13956798)
chr4 (22-201)||(23971466-23971645)
chr4 (91-169)||(28793339-28793416)
[»] chr8 (2 HSPs)
chr8 (22-204)||(30869607-30869789)
chr8 (13-153)||(14728606-14728746)
[»] chr1 (4 HSPs)
chr1 (1-194)||(10023502-10023695)
chr1 (15-158)||(25696201-25696344)
chr1 (22-181)||(12759967-12760126)
chr1 (38-159)||(22058572-22058692)
[»] chr5 (2 HSPs)
chr5 (3-149)||(18601266-18601412)
chr5 (22-204)||(17193307-17193489)
[»] chr6 (3 HSPs)
chr6 (19-204)||(8692648-8692831)
chr6 (79-198)||(8025147-8025266)
chr6 (30-130)||(13005567-13005667)
[»] chr7 (7 HSPs)
chr7 (35-204)||(5220112-5220272)
chr7 (6-135)||(30599804-30599933)
chr7 (28-204)||(5873652-5873827)
chr7 (30-177)||(6035280-6035427)
chr7 (111-150)||(28992765-28992804)
chr7 (144-204)||(22341117-22341177)
chr7 (36-201)||(10081401-10081565)
[»] chr2 (2 HSPs)
chr2 (73-167)||(12545173-12545267)
chr2 (96-203)||(34900791-34900898)
[»] chr3 (4 HSPs)
chr3 (35-159)||(22276416-22276540)
chr3 (7-204)||(7808447-7808639)
chr3 (142-194)||(25032685-25032737)
chr3 (33-204)||(54605212-54605383)


Alignment Details
Target: chr4 (Bit Score: 188; Significance: 1e-102; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 1 - 204
Target Start/End: Complemental strand, 22337339 - 22337136
Alignment:
Q  1 aggatattgtgtaacttattgcaagggtatgggagtcttggtctcctctcaaggtaaatgtcttctcctggcaactgcttcaggatagaatttcaactcg 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||| ||| |||||||    
T  22337339 aggatattgtgtaacttattgcaagggtatgggagtcttggtctcctctcaaggtaaatgtcttctcctggcagctgcttgaggataggattccaactcg 22337240  T
Q  101 tcaaaatctcttttcaaggagaattatagttgatcctggtggtatttcttgtgctttttgtaatgagaatgtagagtcggcttgtcacatttttgttaga 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22337239 tcaaaatctcttttcaaggagaattatagttgatcctggtggtatttcttgtgctttttgtaatgagaatgtagagtcggcttgtcacatttttgttaga 22337140  T
Q  201 tgtc 204  Q
    ||||    
T  22337139 tgtc 22337136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 8 - 199
Target Start/End: Original strand, 2488242 - 2488433
Alignment:
Q  8 tgtgtaacttattgcaagggtatgggagtcttggtctcctctcaaggtaaatgtcttctcctggcaactgcttcaggatagaatttcaactcgtcaaaat 107  Q
    |||| |||||||||||| ||| |||| || ||||| |||||||||||||||||| ||||| ||||| | ||||||||| |  |||   |||| ||| |||    
T  2488242 tgtgcaacttattgcaatggtgtgggtgttttggtttcctctcaaggtaaatgttttctcttggcagccgcttcaggacaagattctcactcatcataat 2488341  T
Q  108 ctcttttcaaggagaattatagttgatcctggtggtatttcttgtgctttttgtaatgagaatgtagagtcggcttgtcacatttttgttag 199  Q
     |||||||||||||||| |||||||||||||||||||||| ||||| |||||||||||||| |||||||||||  |||||||||||||||||    
T  2488342 atcttttcaaggagaataatagttgatcctggtggtatttattgtgttttttgtaatgagactgtagagtcggtctgtcacatttttgttag 2488433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 19 - 166
Target Start/End: Original strand, 13956651 - 13956798
Alignment:
Q  19 ttgcaagggtatgggagtcttggtctcctctcaaggtaaatgtcttctcctggcaactgcttcaggatagaatttcaactcgtcaaaatctcttttcaag 118  Q
    ||||||| || || ||||| |||||||||| |||||| ||||| ||||| || || ||| |||||||||  ||| | ||||| || ||||||||||||||    
T  13956651 ttgcaagagtgtgagagtcgtggtctcctcgcaaggtgaatgttttctcttgccagctgattcaggatacgattccgactcgccagaatctcttttcaag 13956750  T
Q  119 gagaattatagttgatcctggtggtatttcttgtgctttttgtaatga 166  Q
    ||||||||||||||||||||||||||||||||||| ||| ||||||||    
T  13956751 gagaattatagttgatcctggtggtatttcttgtgttttctgtaatga 13956798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 22 - 201
Target Start/End: Original strand, 23971466 - 23971645
Alignment:
Q  22 caagggtatgggagtcttggtctcctctcaaggtaaatgtcttctcctggcaactgcttcaggatagaatttcaactcgtcaaaatctcttttcaaggag 121  Q
    ||||||| || |||| ||||| |||||| ||||| ||||||||||| ||||| |||||||| || |  ||| ||||||| || | |||| ||||||||||    
T  23971466 caagggtgtgagagtattggtatcctctaaaggtgaatgtcttctcttggcagctgcttcaagacaagattccaactcgacagagtctcgtttcaaggag 23971565  T
Q  122 aattatagttgatcctggtggtatttcttgtgctttttgtaatgagaatgtagagtcggcttgtcacatttttgttagat 201  Q
    ||||||| ||||||  ||||||||||  |||| ||| ||||||||| ||||| ||| || ||||||| ||||||||||||    
T  23971566 aattatatttgatcacggtggtatttaatgtgttttctgtaatgagcatgtatagttggtttgtcacgtttttgttagat 23971645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 91 - 169
Target Start/End: Original strand, 28793339 - 28793416
Alignment:
Q  91 tttcaactcgtcaaaatctcttttcaaggagaattatagttgatcctggtggtatttcttgtgctttttgtaatgagaa 169  Q
    |||| ||||| ||||||||||||| |||| | ||||||||||| |||  |||||||||||||| ||| |||| ||||||    
T  28793339 tttcgactcgccaaaatctctttttaagggggattatagttgaccct-atggtatttcttgtgttttatgtactgagaa 28793416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 103; Significance: 2e-51; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 22 - 204
Target Start/End: Original strand, 30869607 - 30869789
Alignment:
Q  22 caagggtatgggagtcttggtctcctctcaaggtaaatgtcttctcctggcaactgcttcaggatagaatttcaactcgtcaaaatctcttttcaaggag 121  Q
    ||||||| || ||||||| ||||||||||||||||||||||||||| ||||| ||||||  |||||| ||| | |||||||| |||||||||||||  ||    
T  30869607 caagggtgtgagagtctttgtctcctctcaaggtaaatgtcttctcttggcagctgcttttggataggattccgactcgtcataatctcttttcaaatag 30869706  T
Q  122 aattatagttgatcctggtggtatttcttgtgctttttgtaatgagaatgtagagtcggcttgtcacatttttgttagatgtc 204  Q
    | |||||||||||| ||||||||||| ||||| |||||||||||||| |||||||| |||||||||| |||||||||||||||    
T  30869707 agttatagttgatcttggtggtatttattgtgttttttgtaatgagagtgtagagttggcttgtcacctttttgttagatgtc 30869789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 13 - 153
Target Start/End: Complemental strand, 14728746 - 14728606
Alignment:
Q  13 aacttattgcaagggtatgggagtcttggtctcctctcaaggtaaatgtcttctcctggcaactgcttcaggatagaatttcaactcgtcaaaatctctt 112  Q
    ||||| ||| |||||  |||||||||||||||||||||||||| ||||| ||||| || || || ||||| ||||| ||| | | || ||| ||||||||    
T  14728746 aactttttgtaagggcgtgggagtcttggtctcctctcaaggtgaatgttttctcttgccagctacttcatgataggattccgattcatcagaatctctt 14728647  T
Q  113 ttcaaggagaattatagttgatcctggtggtatttcttgtg 153  Q
    ||| ||||  ||||||||||||||| |||| ||||||||||    
T  14728646 ttctaggaacattatagttgatcctagtggcatttcttgtg 14728606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 90; Significance: 1e-43; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 1 - 194
Target Start/End: Original strand, 10023502 - 10023695
Alignment:
Q  1 aggatattgtgtaacttattgcaagggtatgggagtcttggtctcctctcaaggtaaatgtcttctcctggcaactgcttcaggatagaatttcaactcg 100  Q
    ||||||||| | | |||||||||| ||| | |||||||||||||||||||||||||||||| ||||| ||| | |||||| |||| ||  ||   |||||    
T  10023502 aggatattgcgaaccttattgcaaaggtgttggagtcttggtctcctctcaaggtaaatgttttctcttggtagctgctttaggacagggttctgactcg 10023601  T
Q  101 tcaaaatctcttttcaaggagaattatagttgatcctggtggtatttcttgtgctttttgtaatgagaatgtagagtcggcttgtcacattttt 194  Q
    |||||| || ||||| | ||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||| | ||||||| |||||    
T  10023602 tcaaaaccttttttctaagagaattatagttgatcctggtggtatttcttgtgttttttgtaatgagattgtagagtcagtttgtcaccttttt 10023695  T

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Target: chr1; HSP #2
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 15 - 158
Target Start/End: Complemental strand, 25696344 - 25696201
Alignment:
Q  15 cttattgcaagggtatgggagtcttggtctcctctcaaggtaaatgtcttctcctggcaactgcttcaggatagaatttcaactcgtcaaaatctctttt 114  Q
    |||||||||| ||| ||||||| |||||| ||| ||||||||||||| ||||| |||||| ||||||||||||| ||| | |||||||||| | | ||||    
T  25696344 cttattgcaaaggtgtgggagttttggtcgcctatcaaggtaaatgttttctcttggcaattgcttcaggataggattccgactcgtcaaattttttttt 25696245  T
Q  115 caaggagaattatagttgatcctggtggtatttcttgtgctttt 158  Q
    ||| ||||||||||||||||| ||||||||||||||||| ||||    
T  25696244 caatgagaattatagttgatcatggtggtatttcttgtgttttt 25696201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 22 - 181
Target Start/End: Original strand, 12759967 - 12760126
Alignment:
Q  22 caagggtatgggagtcttggtctcctctcaaggtaaatgtcttctcctggcaactgcttcaggatagaatttcaactcgtcaaaatctcttttcaaggag 121  Q
    ||||||| ||| | |||||||||||||||||||| | ||| || |  ||||| || ||||||||||| ||| | ||||  |||||||| ||||| |||||    
T  12759967 caagggtgtggtaatcttggtctcctctcaaggtgattgttttattttggcagctacttcaggataggattccgactccacaaaatctattttctaggag 12760066  T
Q  122 aattatagttgatcctggtggtatttcttgtgctttttgtaatgagaatgtagagtcggc 181  Q
    |||||||||||||| ||| ||||||||||||| |||||||||||||  ||| ||||||||    
T  12760067 aattatagttgatcatgggggtatttcttgtgatttttgtaatgagtttgttgagtcggc 12760126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 38 - 159
Target Start/End: Original strand, 22058572 - 22058692
Alignment:
Q  38 ttggtctcctctcaaggtaaatgtcttctcctggcaactgcttcaggatagaatttcaactcgtcaaaatctcttttcaaggagaattatagttgatcct 137  Q
    |||||||||||||||||| | ||| |||||||||||||| ||||||||| ||||| | ||    |||| ||||||||| |||||||||||||||||||      
T  22058572 ttggtctcctctcaaggtgattgttttctcctggcaactacttcaggatcgaattccgaccaaacaaa-tctcttttctaggagaattatagttgatcac 22058670  T
Q  138 ggtggtatttcttgtgcttttt 159  Q
    |||||||||||||||| |||||    
T  22058671 ggtggtatttcttgtgtttttt 22058692  T

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Target: chr5 (Bit Score: 76; Significance: 3e-35; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 3 - 149
Target Start/End: Original strand, 18601266 - 18601412
Alignment:
Q  3 gatattgtgtaacttatt-gcaagggtatgggagtcttggtctcctctcaaggtaaatgtcttctcctggcaactgcttcaggatagaatttcaactcgt 101  Q
    |||||| ||||||||||| |||| ||| |||||||||||||||||||||||||||||||| ||||| || || |||||| ||||||| |||   ||||||    
T  18601266 gatattatgtaacttatttgcaaaggtgtgggagtcttggtctcctctcaaggtaaatgttttctcttgacagctgctt-aggataggattatgactcgt 18601364  T
Q  102 caaaatctcttttcaaggagaattatagttgatcctggtggtatttct 149  Q
    |||||| ||||||| |||||||||||||||||||||||| ||||||||    
T  18601365 caaaatatcttttcgaggagaattatagttgatcctggttgtatttct 18601412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 22 - 204
Target Start/End: Original strand, 17193307 - 17193489
Alignment:
Q  22 caagggtatgggagtcttggtctcctctcaaggtaaatgtcttctcctggcaactgcttcaggatagaatttcaactcgtcaaaatctcttttcaaggag 121  Q
    ||||||| || |||| || |||| |||||||||| ||  | ||||| ||||  |||||||||||||  |||   ||||| || ||||||||||| || ||    
T  17193307 caagggtgtgagagtgtttgtcttctctcaaggtgaagattttctcatggccgctgcttcaggataatattctgactcgccataatctcttttctagaag 17193406  T
Q  122 aattatagttgatcctggtggtatttcttgtgctttttgtaatgagaatgtagagtcggcttgtcacatttttgttagatgtc 204  Q
    |||||||||||| ||| | ||||||||||||| ||| |  |||||| |||||||| || ||||| |  |||||||||||||||    
T  17193407 aattatagttgaccctcgaggtatttcttgtgttttctaaaatgagtatgtagagccgacttgtaatttttttgttagatgtc 17193489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 63; Significance: 2e-27; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 19 - 204
Target Start/End: Complemental strand, 8692831 - 8692648
Alignment:
Q  19 ttgcaagggtatgggagtcttggtctcctctcaaggtaaatgtcttctcctggcaactgcttcaggatagaatttcaactcgtcaaaatctcttttcaag 118  Q
    |||||||| | |||||||| |||||| || ||||| | ||||| ||||| |  ||  ||||||||||||| ||||  |||||| | || ||||||| |||    
T  8692831 ttgcaaggttgtgggagtcgtggtcttctttcaagatgaatgttttctctt--cagttgcttcaggataggattttgactcgttagaaactctttttaag 8692734  T
Q  119 gagaattatagttgatcctggtggtatttcttgtgctttttgtaatgagaatgtagagtcggcttgtcacatttttgttagatgtc 204  Q
    |||||||||||||||||||||||||||||||| |  ||| ||||||||| |||| ||||| | ||||| | |||||||||||||||    
T  8692733 gagaattatagttgatcctggtggtatttcttatattttctgtaatgagtatgtggagtcagtttgtctcctttttgttagatgtc 8692648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 79 - 198
Target Start/End: Complemental strand, 8025266 - 8025147
Alignment:
Q  79 ttcaggatagaatttcaactcgtcaaaatctcttttcaaggagaattatagttgatcctggtg-gtatttcttgtgctttttgtaatgagaatgtagagt 177  Q
    ||||| ||| ||||||||||||||||||| | ||||||||||| | |||| | || ||| ||| |||||| |||||  || ||||||||| |||||||      
T  8025266 ttcagaataaaatttcaactcgtcaaaatatattttcaaggaggaatatattaga-ccttgtgagtattttttgtgtgttctgtaatgagcatgtagaac 8025168  T
Q  178 cggcttgtcacatttttgtta 198  Q
    |||||||||||||||||||||    
T  8025167 cggcttgtcacatttttgtta 8025147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 30 - 130
Target Start/End: Original strand, 13005567 - 13005667
Alignment:
Q  30 tgggagtcttggtctcctctcaaggtaaatgtcttctcctggcaactgcttcaggatagaatttcaactcgtcaaaatctcttttcaaggagaattatag 129  Q
    ||||||||||| ||||||||||||  |||  | || |||||| |  ||||||||||||| ||| |||| ||| | ||||||||||| ||||| |||||||    
T  13005567 tgggagtcttgttctcctctcaagtgaaagtttttttcctggtagttgcttcaggataggattccaacccgtaagaatctcttttctaggaggattatag 13005666  T
Q  130 t 130  Q
    |    
T  13005667 t 13005667  T

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Target: chr7 (Bit Score: 58; Significance: 2e-24; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 35 - 204
Target Start/End: Original strand, 5220112 - 5220272
Alignment:
Q  35 gtcttggtctcctctcaaggtaaatgtcttctcctggcaactgcttcaggatagaatttcaactcgtcaaaatctcttttcaaggagaattatagttgat 134  Q
    |||||||| ||||||||||||||||| |||||| ||||| |||||| ||||||  |||   |||||||| ||  ||||| |||||||||||||||||||     
T  5220112 gtcttggtatcctctcaaggtaaatgccttctcttggcagctgctttaggataagattctgactcgtcataaaatctttccaaggagaattatagttgac 5220211  T
Q  135 cctggtggtatttcttgtgctttttgtaatgagaatgtagagtcggcttgtcacatttttgttagatgtc 204  Q
    | | | ||||||||         ||||| |||||||||||||||| ||||||||||||||||||||||||    
T  5220212 cttcgcggtatttc---------ttgtagtgagaatgtagagtcgacttgtcacatttttgttagatgtc 5220272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 6 - 135
Target Start/End: Complemental strand, 30599933 - 30599804
Alignment:
Q  6 attgtgtaacttattgcaagggtatgggagtcttggtctcctctcaaggtaaatgtcttctcctggcaactgcttcaggatagaatttcaactcgtcaaa 105  Q
    |||||| |||||||||||||||| || || ||||  |||| ||||||||| ||||| ||||| || |||||||||||| |||  |||   ||||| || |    
T  30599933 attgtgcaacttattgcaagggtgtgagaatcttcatctcatctcaaggtgaatgttttctcatgtcaactgcttcagaatatgattgtgactcggcata 30599834  T
Q  106 atctcttttcaaggagaattatagttgatc 135  Q
    ||||||||| ||||||| ||||||||||||    
T  30599833 atctcttttgaaggagagttatagttgatc 30599804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 28 - 204
Target Start/End: Complemental strand, 5873827 - 5873652
Alignment:
Q  28 tatgggagtcttggtctcctctcaaggtaaatgtcttctcctggcaactgcttcaggatagaatttcaactcgtcaaaatctcttttcaaggagaattat 127  Q
    |||| |||||||||||||||||||| || || || ||||| ||||| |||||||| ||||| |||| | || | || |||| |||||| ||||| |||||    
T  5873827 tatgagagtcttggtctcctctcaaagtgaaagttttctcttggcagctgcttcaagataggatttgacct-gacataatcacttttctaggaggattat 5873729  T
Q  128 agttgatcctggtggtatttcttgtgctttttgtaatgagaatgtagagtcggcttgtcacatttttgttagatgtc 204  Q
    |||||| | ||  | ||||||||||| ||| | |||||||  | |||||||| ||  |||| |||||||||||||||    
T  5873728 agttgaccatgaggttatttcttgtgttttctataatgagtttctagagtcgactaatcacctttttgttagatgtc 5873652  T

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Target: chr7; HSP #4
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 30 - 177
Target Start/End: Original strand, 6035280 - 6035427
Alignment:
Q  30 tgggagtcttggtctcctctcaaggtaaatgtcttctcctggcaactgcttcaggatagaattt-caactcgtcaaaatctcttttcaaggagaattata 128  Q
    |||||||||||||||| ||||||||| || || ||||| |||||||| || ||||||||||||| | |||||    ||||| ||| ||||||||||||||    
T  6035280 tgggagtcttggtctcttctcaaggtgaaagttttctcttggcaactactccaggatagaattttcgactcgattgaatctttttccaaggagaattata 6035379  T
Q  129 gttgatcctggtggtatttcttgtgctttttgtaatgagaatgtagagt 177  Q
    ||||| | | | |||| ||||| || ||| ||||||||| |||||||||    
T  6035380 gttga-cattggggtacttcttatgttttgtgtaatgagcatgtagagt 6035427  T

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Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 111 - 150
Target Start/End: Original strand, 28992765 - 28992804
Alignment:
Q  111 ttttcaaggagaattatagttgatcctggtggtatttctt 150  Q
    |||||||| |||||||||||||||||||||||||||||||    
T  28992765 ttttcaagaagaattatagttgatcctggtggtatttctt 28992804  T

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Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 144 - 204
Target Start/End: Original strand, 22341117 - 22341177
Alignment:
Q  144 atttcttgtgctttttgtaatgagaatgtagagtcggcttgtcacatttttgttagatgtc 204  Q
    |||||||||| ||| | |||||||  | ||||||||| |||||||||||||||||||||||    
T  22341117 atttcttgtgttttctataatgagcctatagagtcgggttgtcacatttttgttagatgtc 22341177  T

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Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 36 - 201
Target Start/End: Original strand, 10081401 - 10081565
Alignment:
Q  36 tcttggtctcctctcaaggtaaatgtcttctcctggcaactgcttcaggatagaatttcaactcgtcaaaatctcttttcaaggagaattatagttgatc 135  Q
    ||||| |||||||||||||| ||  | || || || |||| |||| ||||||  |||  |||||  || ||||||||||  |||||||||||| |||  |    
T  10081401 tcttgatctcctctcaaggtgaagattttatcttgccaaccgctttaggatatgattgtaactcaccataatctcttttgtaggagaattataattgccc 10081500  T
Q  136 ctggtggtatttcttgtgctttttgtaatgagaatgtagagtcggcttgtcacatttttgttagat 201  Q
    |||| ||| ||||||||| ||| | | |||||  |||||||||||||||||||  ||||| |||||    
T  10081501 ctgg-ggtgtttcttgtgttttctatgatgaggctgtagagtcggcttgtcaccattttgctagat 10081565  T

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Target: chr2 (Bit Score: 47; Significance: 6e-18; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 73 - 167
Target Start/End: Complemental strand, 12545267 - 12545173
Alignment:
Q  73 aactgcttcaggatagaatttcaactcgtcaaaatctcttttcaaggagaattatagttgatcctggtggtatttcttgtgctttttgtaatgag 167  Q
    |||||||||| ||||  |||||||||||  ||||| ||||||||| ||||||||||| ||||||||||| | ||||||||| ||| |||||||||    
T  12545267 aactgcttcaagatatgatttcaactcgataaaatttcttttcaaagagaattatagctgatcctggtgatgtttcttgtgttttctgtaatgag 12545173  T

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Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 96 - 203
Target Start/End: Complemental strand, 34900898 - 34900791
Alignment:
Q  96 actcgtcaaaatctcttttcaaggagaattatagttgatcctggtggtatttcttgtgctttttgtaatgagaatgtagagtcggcttgtcacatttttg 195  Q
    ||||| || |||||||||| |||||| ||||||| | | |||   | |||||| |||| |||||||||||||  ||||||||||| ||||||| || ||     
T  34900898 actcgacataatctcttttgaaggaggattatagctaacccttaggatatttcatgtgttttttgtaatgagtttgtagagtcggtttgtcaccttctta 34900799  T
Q  196 ttagatgt 203  Q
    ||||||||    
T  34900798 ttagatgt 34900791  T

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Target: chr3 (Bit Score: 45; Significance: 9e-17; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 35 - 159
Target Start/End: Complemental strand, 22276540 - 22276416
Alignment:
Q  35 gtcttggtctcctctcaaggtaaatgtcttctcctggcaactgcttcaggatagaatttcaactcgtcaaaatctcttttcaaggagaattatagttgat 134  Q
    |||||||| |||||| ||| | ||||| ||||  |||||||| ||| || |||| |||  ||||||||| ||||||||||||||||| ||||||||| ||    
T  22276540 gtcttggtttcctcttaagatgaatgttttctattggcaactacttaagaataggattctaactcgtcataatctcttttcaaggaggattatagtttat 22276441  T
Q  135 cctggtggtatttcttgtgcttttt 159  Q
    || ||||  |||||||||| |||||    
T  22276440 ccaggtgtcatttcttgtgtttttt 22276416  T

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Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 7 - 204
Target Start/End: Complemental strand, 7808639 - 7808447
Alignment:
Q  7 ttgtgtaacttattgcaagggtatgggagtcttggtctcctctcaaggtaaatgtcttctcctggcaactgcttcaggata-gaatttcaactcgtcaaa 105  Q
    ||||| ||||| || ||||| | || ||||||||||||||||||||| | ||||||||||| | ||| |||||||| |||| |||||   ||| | || |    
T  7808639 ttgtgcaacttctttcaaggttgtgagagtcttggtctcctctcaagatgaatgtcttctcttagcagctgcttcatgataggaattctgacttgacata 7808540  T
Q  106 atctcttttcaaggagaattatagttgatcctggtggtatttcttgtgctttttgtaatgagaatgtagagtcggcttgtcacatttttgttagatgtc 204  Q
    || | |||||||  ||||||||||||||||    || ||||||||||| ||| || |||||| ||||| |||||| ||||||| |||||| ||||||||    
T  7808539 at-tattttcaaaaagaattatagttgatc---ttgatatttcttgtgttttctgaaatgag-atgta-agtcggtttgtcacctttttggtagatgtc 7808447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 142 - 194
Target Start/End: Complemental strand, 25032737 - 25032685
Alignment:
Q  142 gtatttcttgtgctttttgtaatgagaatgtagagtcggcttgtcacattttt 194  Q
    |||||||||||  ||| || |||||| ||||||||||||||||||||||||||    
T  25032737 gtatttcttgtattttctgcaatgagcatgtagagtcggcttgtcacattttt 25032685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 33 - 204
Target Start/End: Original strand, 54605212 - 54605383
Alignment:
Q  33 gagtcttggtctcctctcaaggtaaatgtcttctcctggcaactgcttcaggatagaatttcaactcgtcaaaatctcttttcaaggagaattatagttg 132  Q
    ||||||| ||||||||||||| | || || ||||| | |||  ||| ||| ||||| ||| | ||||| |||||||| |  |||||||| ||||| ||||    
T  54605212 gagtctttgtctcctctcaagatgaaggttttctcgtagcagttgcatcaagataggattccgactcgccaaaatctatactcaaggaggattattgttg 54605311  T
Q  133 atcctggtggtatttcttgtgctttttgtaatgagaatgtagagtcggcttgtcacatttttgttagatgtc 204  Q
    | | ||| |||||||||||   ||| |||||||||  ||||||||   |||||||  ||||| |||||||||    
T  54605312 accttgggggtatttcttgcattttctgtaatgagtttgtagagttatcttgtcatctttttcttagatgtc 54605383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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