View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3218_low_38 (Length: 237)
Name: NF3218_low_38
Description: NF3218
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3218_low_38 |
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Alignment Details
Target: chr4 (Bit Score: 125; Significance: 2e-64; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 97 - 221
Target Start/End: Original strand, 31662027 - 31662151
Alignment:
| Q |
97 |
agctaaccagagcagatgagcatctttttcaagaaaggattgaacaagtgattaaacatcgtccctgtaatatcccgcatgtgagattcagatatctata |
196 |
Q |
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| T |
31662027 |
agctaaccagagcagatgagcatctttttcaagaaaggattgaacaagtgattaaacatcgtccctgtaatatcccgcatgtgagattcagatatctata |
31662126 |
T |
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| Q |
197 |
caagttattttatcctcggaacttt |
221 |
Q |
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| T |
31662127 |
caagttattttatcctcggaacttt |
31662151 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 31 - 161
Target Start/End: Original strand, 31683544 - 31683674
Alignment:
| Q |
31 |
gtcgagtagtcgtaagttactagccgcctactctatcaataacggattttgcctgccgctctaccaagctaaccagagcagatgagcatctttttcaaga |
130 |
Q |
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| T |
31683544 |
gtcgagtagtcgtaagttactagccacctactctatcaataacggatttcgcctgccgctctaccaagctaaccagagcagatgagcatctctttcaaga |
31683643 |
T |
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| Q |
131 |
aaggattgaacaagtgattaaacatcgtccc |
161 |
Q |
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| T |
31683644 |
aaggattgaacaagtgattaaacatcatccc |
31683674 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 97 - 142
Target Start/End: Original strand, 32654418 - 32654463
Alignment:
| Q |
97 |
agctaaccagagcagatgagcatctttttcaagaaaggattgaaca |
142 |
Q |
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| T |
32654418 |
agctaaccagaacatatgagcatctctttcaagaaaggcttgaaca |
32654463 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 162 - 221
Target Start/End: Complemental strand, 31316912 - 31316849
Alignment:
| Q |
162 |
tgtaatatcccgcatgtgagattcag----atatctatacaagttattttatcctcggaacttt |
221 |
Q |
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| T |
31316912 |
tgtaatatcccgcatgtgagattcagtcagatatcgatacaagttattttatcctcggaacttt |
31316849 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 162 - 221
Target Start/End: Original strand, 31330006 - 31330069
Alignment:
| Q |
162 |
tgtaatatcccgcatgtgagattcag----atatctatacaagttattttatcctcggaacttt |
221 |
Q |
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| T |
31330006 |
tgtaatatcccgcatgtgagattaagtcacatatcgatacaagttattttatccttggaacttt |
31330069 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 162 - 221
Target Start/End: Original strand, 31336727 - 31336790
Alignment:
| Q |
162 |
tgtaatatcccgcatgtgagattcag----atatctatacaagttattttatcctcggaacttt |
221 |
Q |
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||||||||||||||||||||||| || ||||| ||||||||||||||||||| |||||||| |
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| T |
31336727 |
tgtaatatcccgcatgtgagattaagtcacatatcgatacaagttattttatccttggaacttt |
31336790 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 162 - 221
Target Start/End: Complemental strand, 18113359 - 18113297
Alignment:
| Q |
162 |
tgtaatatcccgcatgtgagattcag----atatctatacaagttattttatcctcggaacttt |
221 |
Q |
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|||||||||| ||||||||||||||| ||||| |||||||||||||||||||||||||||| |
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| T |
18113359 |
tgtaatatcc-gcatgtgagattcagttagatatcgatacaagttattttatcctcggaacttt |
18113297 |
T |
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