View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3218_low_39 (Length: 237)

Name: NF3218_low_39
Description: NF3218
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3218_low_39
NF3218_low_39
[»] chr6 (3 HSPs)
chr6 (1-222)||(33558163-33558383)
chr6 (1-222)||(33565380-33565599)
chr6 (138-179)||(31954871-31954912)
[»] chr2 (2 HSPs)
chr2 (138-211)||(5578024-5578097)
chr2 (138-184)||(26009606-26009652)
[»] chr4 (3 HSPs)
chr4 (138-222)||(37861209-37861293)
chr4 (139-211)||(19399892-19399964)
chr4 (138-222)||(46963879-46963963)
[»] chr7 (2 HSPs)
chr7 (138-179)||(30003832-30003873)
chr7 (138-211)||(47375814-47375886)
[»] chr5 (1 HSPs)
chr5 (139-211)||(15472870-15472942)
[»] chr1 (1 HSPs)
chr1 (138-220)||(40619532-40619614)
[»] chr8 (2 HSPs)
chr8 (139-220)||(43108652-43108732)
chr8 (138-166)||(9435349-9435377)


Alignment Details
Target: chr6 (Bit Score: 189; Significance: 1e-102; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 33558163 - 33558383
Alignment:
Q  1 gctttctttttggaagctggtactgaaatgataatatgcatggtaattacatctttcatatatattattaagagtcatgctaattaagttgctatcttct 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33558163 gctttctttttggaagctggtactgaaatgataatatgcatggtaattacatctttcatatatattattaagagtcatgctaattaagttgctatcttct 33558262  T
Q  101 gcgtccctttagtgcacaagttaaagatctnnnnnnngaattaaaacataaattttgtattgtataaataagtttttaagctttgtggatatagaatgca 200  Q
    ||||||||||| ||||||||||||||||||       |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33558263 gcgtcccttta-tgcacaagttaaagatctaaaaaaagaattaaaacataaattttgtattgtataaataagtttttaagctttgtggatatagaatgca 33558361  T
Q  201 caatttccaaacttaggtttct 222  Q
     |||||||||||||||||||||    
T  33558362 taatttccaaacttaggtttct 33558383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 33565380 - 33565599
Alignment:
Q  1 gctttctttttggaagctggtactgaaatgataatatgcatggtaattacatctttcatatatattattaagagtcatgctaattaagttgctatcttct 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||    ||||||||||| ||||    
T  33565380 gctttctttttggaagctggtactgaaatgataatatgcatggtaattacatccttcatatatattactaagagtcatgc----taagttgctattttct 33565475  T
Q  101 gcgtccctttagtgcacaagttaaagatctnnnnnnngaattaaaacataaattttgtattg--tataaataagtttttaagctttgtggatatagaatg 198  Q
    |||| ||||||| ||||||||||| ||| |       ||||||||||||||||||||||  |   | ||||||||||||| |||||   || || |||||    
T  33565476 gcgtgcctttagggcacaagttaaggattttagaaaagaattaaaacataaattttgtagcgaaaaaaaataagtttttatgcttttgagacattgaatg 33565575  T
Q  199 cacaatttccaaacttaggtttct 222  Q
    ||||||||||||| ||| ||||||    
T  33565576 cacaatttccaaaattatgtttct 33565599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 138 - 179
Target Start/End: Complemental strand, 31954912 - 31954871
Alignment:
Q  138 gaattaaaacataaattttgtattgtataaataagtttttaa 179  Q
    |||||||||||||| |||||||||| | ||||||||||||||    
T  31954912 gaattaaaacataagttttgtattgaaaaaataagtttttaa 31954871  T

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Target: chr2 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 138 - 211
Target Start/End: Complemental strand, 5578097 - 5578024
Alignment:
Q  138 gaattaaaacataaattttgtattgtataaataagtttttaagctttgtggatatagaatgcacaatttccaaa 211  Q
    ||||||||||||||||||||||||| | |||||||||||||| ||||   |||||  |||||||||||||||||    
T  5578097 gaattaaaacataaattttgtattgaaaaaataagtttttaaactttcaagatattaaatgcacaatttccaaa 5578024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 138 - 184
Target Start/End: Original strand, 26009606 - 26009652
Alignment:
Q  138 gaattaaaacataaattttgtattgtataaataagtttttaagcttt 184  Q
    |||||||||||||| |||||||||| | |||||||||||||| ||||    
T  26009606 gaattaaaacataagttttgtattggaaaaataagtttttaaacttt 26009652  T

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Target: chr4 (Bit Score: 37; Significance: 0.000000000005; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 138 - 222
Target Start/End: Complemental strand, 37861293 - 37861209
Alignment:
Q  138 gaattaaaacataaattttgtattgtataaataagtttttaagctttgtggatatagaatgcacaatttccaaacttaggtttct 222  Q
    |||||||||||||| |||||||||| | |||||| ||||||| ||||   || || |||||||||||||||||| ||| ||||||    
T  37861293 gaattaaaacataagttttgtattgaaaaaataactttttaaactttcaagacattgaatgcacaatttccaaaattaagtttct 37861209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 139 - 211
Target Start/End: Complemental strand, 19399964 - 19399892
Alignment:
Q  139 aattaaaacataaattttgtattgtataaataagtttttaagctttgtggatatagaatgcacaatttccaaa 211  Q
    ||||||| |||||||||||||||| | ||||||||||||||  |||   || || ||||||||||||||||||    
T  19399964 aattaaagcataaattttgtattgaaaaaataagtttttaaattttcaagacattgaatgcacaatttccaaa 19399892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 138 - 222
Target Start/End: Original strand, 46963879 - 46963963
Alignment:
Q  138 gaattaaaacataaattttgtattgtataaataagtttttaagctttgtggatatagaatgcacaatttccaaacttaggtttct 222  Q
    |||||||||||||| |||||||||| | |||||| ||||||| ||||   || || |||||||| ||||||||| ||| ||||||    
T  46963879 gaattaaaacataagttttgtattgaaaaaataactttttaaactttcaagacattgaatgcacgatttccaaaattaagtttct 46963963  T

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Target: chr7 (Bit Score: 34; Significance: 0.0000000003; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 138 - 179
Target Start/End: Complemental strand, 30003873 - 30003832
Alignment:
Q  138 gaattaaaacataaattttgtattgtataaataagtttttaa 179  Q
    ||||||||||||||||||||||||| | ||||||||||||||    
T  30003873 gaattaaaacataaattttgtattgaaaaaataagtttttaa 30003832  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 138 - 211
Target Start/End: Original strand, 47375814 - 47375886
Alignment:
Q  138 gaattaaaacataaattttgtattgtataaataagtttttaagctttgtggatatagaatgcacaatttccaaa 211  Q
    |||||||||||||| |||||||||| | |||||| ||||||| ||||   || || ||||||||||||||||||    
T  47375814 gaattaaaacataagttttgtattg-aaaaataactttttaatctttcaagacattgaatgcacaatttccaaa 47375886  T

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Target: chr5 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 139 - 211
Target Start/End: Complemental strand, 15472942 - 15472870
Alignment:
Q  139 aattaaaacataaattttgtattgtataaataagtttttaagctttgtggatatagaatgcacaatttccaaa 211  Q
    |||||||| |||| |||||||||| | ||||||||||||||  |||   ||||| ||||||||||||||||||    
T  15472942 aattaaaatataagttttgtattgaaaaaataagtttttaatttttaaagatattgaatgcacaatttccaaa 15472870  T

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Target: chr1 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 138 - 220
Target Start/End: Original strand, 40619532 - 40619614
Alignment:
Q  138 gaattaaaacataaattttgtattgtataaataagtttttaagctttgtggatatagaatgcacaatttccaaacttaggttt 220  Q
    |||||||||||||| |||||||||  | |||||| ||||||| ||||   ||||| ||||||||||||| |||| ||| ||||    
T  40619532 gaattaaaacataatttttgtattaaaaaaataaatttttaaacttttaagatattgaatgcacaattttcaaaattaagttt 40619614  T

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Target: chr8 (Bit Score: 30; Significance: 0.00000008; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 139 - 220
Target Start/End: Original strand, 43108652 - 43108732
Alignment:
Q  139 aattaaaacataaattttgtattgtataaataagtttttaagctttgtggatatagaatgcacaatttccaaacttaggttt 220  Q
    |||||||| ||||||||||||||| | |||||||||||||| ||||   |||||  |||||||||||| |||| ||| ||||    
T  43108652 aattaaaatataaattttgtattg-aaaaataagtttttaaactttcaagatattaaatgcacaattttcaaaattaagttt 43108732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 138 - 166
Target Start/End: Complemental strand, 9435377 - 9435349
Alignment:
Q  138 gaattaaaacataaattttgtattgtata 166  Q
    |||||||||||||||||||||||||||||    
T  9435377 gaattaaaacataaattttgtattgtata 9435349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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