View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3218_low_4 (Length: 496)
Name: NF3218_low_4
Description: NF3218
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3218_low_4 |
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Alignment Details
Target: chr4 (Bit Score: 246; Significance: 1e-136; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 1 - 270
Target Start/End: Complemental strand, 34405431 - 34405162
Alignment:
| Q |
1 |
ctttttgcagcgcaaagctccaatattttttcaaggtcttcaagtttcattgaacgtgcattcccattggcatcccccaaggcttcagtcccatgagcca |
100 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
34405431 |
ctttttgcagcgcaaagctccaatatttgttcaaggtcttcaagtttcattgaacgtgcattcccattggcaccccccaaggcttcagtcccatgagcca |
34405332 |
T |
|
| Q |
101 |
aaacaaactcagcttcttcaacattctccacaactcgcaagtccaatccctagacaaagttatttgtatgctgtaagatttcaaatctattgatgcatat |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||| |||||||||||||| |
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| T |
34405331 |
aaacaaactcagcttcttcaacattctccacaactcgcaagtccaagccctagacaaagttatttatatgctgtaagatttcaaagctattgatgcatat |
34405232 |
T |
|
| Q |
201 |
tatctttggcaatcaactttacattatgtaacataataacttccctgtattttttatatttgaccataat |
270 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
34405231 |
tatctttggcaatcaactttacattatgtaacataataacttccctgtaatttttatatttgaccataat |
34405162 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 1 - 270
Target Start/End: Complemental strand, 34399757 - 34399488
Alignment:
| Q |
1 |
ctttttgcagcgcaaagctccaatattttttcaaggtcttcaagtttcattgaacgtgcattcccattggcatcccccaaggcttcagtcccatgagcca |
100 |
Q |
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| T |
34399757 |
ctttttgcagcgcaaagctccaatatttgttcaaggtcttcaagtttcattgaacgtgcattcccattggcaccccccaaggcttcagtcccatgagcca |
34399658 |
T |
|
| Q |
101 |
aaacaaactcagcttcttcaacattctccacaactcgcaagtccaatccctagacaaagttatttgtatgctgtaagatttcaaatctattgatgcatat |
200 |
Q |
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| T |
34399657 |
aaacaaactcagcttcttcaacattctccacaactcgcaagtccaagccctagacaaagttatttatatgctgtaagatttcaaagctattgatgcatat |
34399558 |
T |
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| Q |
201 |
tatctttggcaatcaactttacattatgtaacataataacttccctgtattttttatatttgaccataat |
270 |
Q |
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||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
34399557 |
tatctttggcaatcaactttaaattatgtaacataataacttccctgtaatttttatatttgaccataat |
34399488 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 74; Significance: 1e-33; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 352 - 483
Target Start/End: Complemental strand, 19080679 - 19080540
Alignment:
| Q |
352 |
tctttttccttgtt-gttcaatatctttannnnnnnngtttgttttagtttcttaaaaaagcctgaaacaaaagataatagaacagaagttgaaca---- |
446 |
Q |
| |
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|||||||||||||| |||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||| |
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| T |
19080679 |
tctttttccttgtttgttcaatatctttattttttttgtttgttttagtttcttaaaaaggcctgaaacaaaagataatagaatagaagttgaacacgtt |
19080580 |
T |
|
| Q |
447 |
---ttttgttctatgcaccaaactagcaagtatagtgttc |
483 |
Q |
| |
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| T |
19080579 |
ctgttttgttctatgcaccaaactagcaagtatagtgttc |
19080540 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 69; Significance: 9e-31; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 388 - 483
Target Start/End: Original strand, 2482930 - 2483032
Alignment:
| Q |
388 |
gtttgttttagtttcttaaaaaagcctgaaacaaaagataatagaacagaagttgaaca-------ttttgttctatgcaccaaactagcaagtatagtg |
480 |
Q |
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|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||| |
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| T |
2482930 |
gtttgttttagtttcttaaaaaggcctgaaacaaaagataatagaacagaagttgaacacgttttgttttcttctatgcaccaaactagcaagtatagtg |
2483029 |
T |
|
| Q |
481 |
ttc |
483 |
Q |
| |
|
||| |
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|
| T |
2483030 |
ttc |
2483032 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 64; Significance: 9e-28; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 354 - 483
Target Start/End: Complemental strand, 17195634 - 17195498
Alignment:
| Q |
354 |
tttttccttgtt-gttcaatatctttannnnnnnngtttgttttagtttcttaaaaaagcctgaaacaaaagataatagaacagaagttgaaca------ |
446 |
Q |
| |
|
|||||||||||| |||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||| | ||||||||||| |
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| T |
17195634 |
tttttccttgtttgttcaatatctttattttttttgtttgttttagtttcttaaaaatgcctgaaacaaaagataatagatc-gaagttgaacacgttct |
17195536 |
T |
|
| Q |
447 |
-ttttgttctatgcaccaaactagcaagtatagtgttc |
483 |
Q |
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||||||||||||||||||||||||||||||||||||| |
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| T |
17195535 |
gttttgttctatgcaccaaactagcaagtatagtgttc |
17195498 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 389 - 482
Target Start/End: Complemental strand, 54515377 - 54515277
Alignment:
| Q |
389 |
tttgttttagtttcttaaaaaagcctgaaacaaaagataatagaacagaagttgaaca-------ttttgttctatgcaccaaactagcaagtatagtgt |
481 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||| || ||||||| ||||||||||| ||||||||||||||||||||||| |
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| T |
54515377 |
tttgttttagtttcttaaaaagacctgaaacaaaagataatagaacaaaaattgaacacgttctgttttgttctatacaccaaactagcaagtatagtgt |
54515278 |
T |
|
| Q |
482 |
t |
482 |
Q |
| |
|
| |
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|
| T |
54515277 |
t |
54515277 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 391 - 446
Target Start/End: Original strand, 52320015 - 52320070
Alignment:
| Q |
391 |
tgttttagtttcttaaaaaagcctgaaacaaaagataatagaacagaagttgaaca |
446 |
Q |
| |
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||||||||||||||||||| || ||||| ||||||||||||||||||||||||||| |
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| T |
52320015 |
tgttttagtttcttaaaaaggcatgaaaaaaaagataatagaacagaagttgaaca |
52320070 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 61; Significance: 6e-26; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 388 - 483
Target Start/End: Complemental strand, 44531640 - 44531538
Alignment:
| Q |
388 |
gtttgttttagtttcttaaaaaagcctgaaacaaaagataatagaacagaagttgaaca-------ttttgttctatgcaccaaactagcaagtatagtg |
480 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||| ||||||| ||||||||||||||||||||||| || |
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| T |
44531640 |
gtttgttttagtttcttaaaaaagcttgaaacaaaagataatataacagaagttgaacacgttctgttttgttatatgcaccaaactagcaagtataatg |
44531541 |
T |
|
| Q |
481 |
ttc |
483 |
Q |
| |
|
||| |
|
|
| T |
44531540 |
ttc |
44531538 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 388 - 477
Target Start/End: Complemental strand, 6582932 - 6582836
Alignment:
| Q |
388 |
gtttgttttagtttcttaaaaaagcctgaaacaaaagataatagaacagaagttgaaca-------ttttgttctatgcaccaaactagcaagtata |
477 |
Q |
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|||||||||||||||||||||| || ||||||||||||||||| ||||||||||||||| ||||||||||||||||| ||||||||||||| |
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| T |
6582932 |
gtttgttttagtttcttaaaaaggcttgaaacaaaagataatataacagaagttgaacacgttctgttttgttctatgcaccatactagcaagtata |
6582836 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 388 - 477
Target Start/End: Original strand, 36149871 - 36149967
Alignment:
| Q |
388 |
gtttgttttagtttcttaaaaaagcctgaaacaaaagataatagaacagaagttgaaca-------ttttgttctatgcaccaaactagcaagtata |
477 |
Q |
| |
|
|||||||||||||||||||||| || ||||||||||||||||| ||||||||||||||| | |||||||||||||||| |||||||||||| |
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| T |
36149871 |
gtttgttttagtttcttaaaaaggcttgaaacaaaagataatataacagaagttgaacacgttctgtattgttctatgcaccaagctagcaagtata |
36149967 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 403 - 479
Target Start/End: Complemental strand, 20651177 - 20651094
Alignment:
| Q |
403 |
ttaaaaaagcctgaaacaaaagataatagaacagaagttgaaca-------ttttgttctatgcaccaaactagcaagtatagt |
479 |
Q |
| |
|
||||||| | |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||| |
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| T |
20651177 |
ttaaaaaggtctgaaacaaaagataatagaacagaagttgaacacgttatgttttgttctatgcaccaaactagcaaggatagt |
20651094 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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