View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3218_low_46 (Length: 203)
Name: NF3218_low_46
Description: NF3218
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3218_low_46 |
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Alignment Details
Target: chr4 (Bit Score: 170; Significance: 2e-91; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 1 - 197
Target Start/End: Complemental strand, 28934841 - 28934638
Alignment:
| Q |
1 |
tttctaagattaagtatcaaatataactcagtttttctactcctattatgggtcctatatcacgaaccttgatgtaagca-------ctggttttattgc |
93 |
Q |
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| T |
28934841 |
tttctaagattaagtatcaaatataactcagtttttctattcctattatgggtcctatatcacgaaccttgatgtaagcattaagcactggttttattgc |
28934742 |
T |
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| Q |
94 |
ctgctgcacttcattcacaaattctggtaaggaaaaataactggcccatgtgatcaaaatgaaagaaaatggtgttagaaattaagataataagaccaag |
193 |
Q |
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| T |
28934741 |
ctgctgcacttcattcacaaattctggtaaggaaaaataactggcccatgtgatcaaaatgaaagaaaacggtgttagaaattaagataataagaccaag |
28934642 |
T |
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| Q |
194 |
gaaa |
197 |
Q |
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|||| |
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| T |
28934641 |
gaaa |
28934638 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 28 - 171
Target Start/End: Complemental strand, 10188502 - 10188352
Alignment:
| Q |
28 |
tcagtttttctactcctattatgggtcctatatcacgaaccttgatgtaagcact-------ggttttattgcctgctgcacttcattcacaaattctgg |
120 |
Q |
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| T |
10188502 |
tcagtttttctattccttttatggatcctatatcactaaccttgatgtaagcattaagcaccggttttattgcctcctgcacttctcccacaaagtctgg |
10188403 |
T |
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| Q |
121 |
taaggaaaaataactggcccatgtgatcaaaatgaaagaaaatggtgttag |
171 |
Q |
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| T |
10188402 |
taaagaaaatttactggctcatgtgatcaaattataagaaaatgatgttag |
10188352 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 61; Significance: 2e-26; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 28 - 171
Target Start/End: Original strand, 35119483 - 35119633
Alignment:
| Q |
28 |
tcagtttttctactcctattatgggtcctatatcacgaaccttgatgtaag-------cactggttttattgcctgctgcacttcattcacaaattctgg |
120 |
Q |
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|||||||||| | |||| || ||||||||||||||| |||||||||||||| ||||||||||||||||| ||||||||| |||||||||||| |
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| T |
35119483 |
tcagtttttccattccttttctgggtcctatatcactaaccttgatgtaagcattaagcactggttttattgcctcctgcacttctgccacaaattctgg |
35119582 |
T |
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| Q |
121 |
taaggaaaaataactggcccatgtgatcaaaatgaaagaaaatggtgttag |
171 |
Q |
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| T |
35119583 |
taaggaaaatttactggttcatgtgatcaaattaaaagaaaatgatgttag |
35119633 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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