View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3218_low_7 (Length: 439)

Name: NF3218_low_7
Description: NF3218
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3218_low_7
NF3218_low_7
[»] chr4 (5 HSPs)
chr4 (1-430)||(22337405-22337835)
chr4 (55-120)||(50002468-50002532)
chr4 (55-115)||(3244506-3244565)
chr4 (159-199)||(17220586-17220626)
chr4 (167-199)||(22066308-22066340)
[»] chr2 (5 HSPs)
chr2 (54-120)||(30312830-30312895)
chr2 (54-120)||(33561503-33561568)
chr2 (54-93)||(2336665-2336704)
chr2 (55-120)||(962640-962704)
chr2 (55-120)||(40163424-40163489)
[»] chr1 (5 HSPs)
chr1 (55-100)||(39066271-39066316)
chr1 (54-120)||(1188640-1188705)
chr1 (55-120)||(26661574-26661638)
chr1 (55-120)||(32594768-32594832)
chr1 (55-120)||(41157033-41157097)
[»] chr5 (2 HSPs)
chr5 (54-120)||(10351223-10351290)
chr5 (55-120)||(35150049-35150112)
[»] chr6 (2 HSPs)
chr6 (54-96)||(6071173-6071215)
chr6 (54-96)||(8481967-8482009)
[»] chr3 (1 HSPs)
chr3 (54-120)||(39336281-39336346)
[»] chr8 (1 HSPs)
chr8 (55-120)||(34835251-34835315)


Alignment Details
Target: chr4 (Bit Score: 342; Significance: 0; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 342; E-Value: 0
Query Start/End: Original strand, 1 - 430
Target Start/End: Original strand, 22337405 - 22337835
Alignment:
Q  1 ttgttgtgtagaaagtgtgaattagaagttcaacatgacttcaaaaagtaatagaggttgaacactttataactgagatgacccataaattcattgtctt 100  Q
    ||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  22337405 ttgttgtgtagcaactgtgaattagaagttcaacatgacttcaaaaagtaatagaggttgaacactttataactgagatgacctataaattcattgtctt 22337504  T
Q  101 taaagttttgggtaaaagtgaatggtccattcaaagctcctctcatgatccaacaatgatgtatataatttaaatctctaatatatttataatacataag 200  Q
    ||||||||||| ||||||||||| |||| ||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  22337505 taaagttttggataaaagtgaatcgtcccttcaaagctcctctcataatccaacaataatgtatataatttaaatctctaatatatttataatacataag 22337604  T
Q  201 ttatatatttgagttgtgggnnnnnnntctagcatttaaaagtctgtgataaaactatgttcatgttaaaaatcaacttgacaatagtggggagtttatt 300  Q
    |||||||||| ||||||||        |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22337605 ttatatatttcagttgtggcaaaaaaatctagcatttaaaagtctctgataaaactatgttcatgttaaaaatcaacttgacaatagtggggagtttatt 22337704  T
Q  301 actttaacatgctaaagaccacctaatataagatattatctttgaaaaa-ttgatttactcttttgtaatagtcaaggccatggaatttactattacctc 399  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22337705 actttaacatgctaaagaccacctaatataacatattatctttgaaaaatttgatttactcttttgtaatagtcaaggccatggaatttactattacctc 22337804  T
Q  400 taatacaagttcatagctacgatgatgtcca 430  Q
    | |||||||||||||||||||  ||||||||    
T  22337805 tgatacaagttcatagctacgtagatgtcca 22337835  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 55 - 120
Target Start/End: Original strand, 50002468 - 50002532
Alignment:
Q  55 aggttgaacactttataactgagatgacccataaattcattgtctttaaagttttgggtaaaagtg 120  Q
    |||||||||||||| ||| | ||| ||||||||||| ||||||| |||| ||||||||||| ||||    
T  50002468 aggttgaacactttttaagtaagaggacccataaatccattgtc-ttaaggttttgggtaagagtg 50002532  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 55 - 115
Target Start/End: Complemental strand, 3244565 - 3244506
Alignment:
Q  55 aggttgaacactttataactgagatgacccataaattcattgtctttaaagttttgggtaa 115  Q
    ||||||||||  |||||| | ||| |||||||||| |||||||||| ||||||||||||||    
T  3244565 aggttgaacatcttataagtaagaggacccataaactcattgtctt-aaagttttgggtaa 3244506  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 159 - 199
Target Start/End: Original strand, 17220586 - 17220626
Alignment:
Q  159 atgtatataatttaaatctctaatatatttataatacataa 199  Q
    |||||| |||||||||| |||||||||| ||||||||||||    
T  17220586 atgtatgtaatttaaatatctaatatatctataatacataa 17220626  T

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Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 167 - 199
Target Start/End: Complemental strand, 22066340 - 22066308
Alignment:
Q  167 aatttaaatctctaatatatttataatacataa 199  Q
    ||||||||| |||||||||||||||||||||||    
T  22066340 aatttaaatatctaatatatttataatacataa 22066308  T

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Target: chr2 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 54 - 120
Target Start/End: Original strand, 30312830 - 30312895
Alignment:
Q  54 gaggttgaacactttataactgagatgacccataaattcattgtctttaaagttttgggtaaaagtg 120  Q
    ||||||||||||||||||||| |||||||||||||| | ||| || |||| ||||||||||||||||    
T  30312830 gaggttgaacactttataacttagatgacccataaacttatt-tccttaaggttttgggtaaaagtg 30312895  T

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Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 54 - 120
Target Start/End: Complemental strand, 33561568 - 33561503
Alignment:
Q  54 gaggttgaacactttataactgagatgacccataaattcattgtctttaaagttttgggtaaaagtg 120  Q
    |||||| |||||||||||| ||||| |||||||||| |||||||| |||| ||||||||||| ||||    
T  33561568 gaggttaaacactttataagtgagaggacccataaactcattgtc-ttaaggttttgggtaagagtg 33561503  T

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Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 54 - 93
Target Start/End: Original strand, 2336665 - 2336704
Alignment:
Q  54 gaggttgaacactttataactgagatgacccataaattca 93  Q
    ||||||||||||||||||| ||||| ||||||||||||||    
T  2336665 gaggttgaacactttataagtgagaggacccataaattca 2336704  T

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Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 55 - 120
Target Start/End: Original strand, 962640 - 962704
Alignment:
Q  55 aggttgaacactttataactgagatgacccataaattcattgtctttaaagttttgggtaaaagtg 120  Q
    ||||||||||| |||||| ||||| ||||||||||  ||||||| |||| ||||||||||| ||||    
T  962640 aggttgaacaccttataagtgagaggacccataaacccattgtc-ttaaggttttgggtaagagtg 962704  T

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Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 55 - 120
Target Start/End: Complemental strand, 40163489 - 40163424
Alignment:
Q  55 aggttgaacactttataactgagatgacccataaattcattgtctttaaagttttgggtaaaagtg 120  Q
    ||||||||||| |||||| | ||||||||||| ||   | ||||||||| ||||||||||||||||    
T  40163489 aggttgaacaccttataagtaagatgacccattaacctagtgtctttaaggttttgggtaaaagtg 40163424  T

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Target: chr1 (Bit Score: 34; Significance: 0.0000000006; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 55 - 100
Target Start/End: Complemental strand, 39066316 - 39066271
Alignment:
Q  55 aggttgaacactttataactgagatgacccataaattcattgtctt 100  Q
    ||||||||||| |||||||| |||||||||||||| ||||||||||    
T  39066316 aggttgaacaccttataactaagatgacccataaaatcattgtctt 39066271  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 54 - 120
Target Start/End: Complemental strand, 1188705 - 1188640
Alignment:
Q  54 gaggttgaacactttataactgagatgacccataaattcattgtctttaaagttttgggtaaaagtg 120  Q
    ||||||||| | ||||||| ||||| ||| |||||| |||||| |||||| ||||||||||||||||    
T  1188705 gaggttgaatattttataagtgagaagactcataaactcattg-ctttaaggttttgggtaaaagtg 1188640  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 55 - 120
Target Start/End: Complemental strand, 26661638 - 26661574
Alignment:
Q  55 aggttgaacactttataactgagatgacccataaattcattgtctttaaagttttgggtaaaagtg 120  Q
    ||||||||||| |||||| ||||| |||||||||| |||||| | |||| ||||||||||| ||||    
T  26661638 aggttgaacaccttataagtgagaggacccataaactcattg-ccttaaggttttgggtaagagtg 26661574  T

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Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 55 - 120
Target Start/End: Complemental strand, 32594832 - 32594768
Alignment:
Q  55 aggttgaacactttataactgagatgacccataaattcattgtctttaaagttttgggtaaaagtg 120  Q
    ||||||||||| |||||| | ||| |||||||||| |||||||| |||| ||||||||||| ||||    
T  32594832 aggttgaacaccttataagtaagaggacccataaactcattgtc-ttaaggttttgggtaagagtg 32594768  T

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Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 55 - 120
Target Start/End: Original strand, 41157033 - 41157097
Alignment:
Q  55 aggttgaacactttataactgagatgacccataaattcattgtctttaaagttttgggtaaaagtg 120  Q
    ||||||||||| |||||| | ||| |||||||||| |||||| |||||| ||||||||||| ||||    
T  41157033 aggttgaacaccttataagtaagaggacccataaactcattg-ctttaaggttttgggtaagagtg 41157097  T

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Target: chr5 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 54 - 120
Target Start/End: Complemental strand, 10351290 - 10351223
Alignment:
Q  54 gaggttgaacactttataactgagatgacccataaattcattgtctttaa-agttttgggtaaaagtg 120  Q
    ||||||||||| ||||||  ||| |||||||||||| |||||||||| || | |||||||||||||||    
T  10351290 gaggttgaacattttatacgtgaaatgacccataaactcattgtcttaaatatttttgggtaaaagtg 10351223  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 55 - 120
Target Start/End: Original strand, 35150049 - 35150112
Alignment:
Q  55 aggttgaacactttataactgagatgacccataaattcattgtctttaaagttttgggtaaaagtg 120  Q
    ||||||||||| |||||| | ||| ||||||||||| ||||||| |||| ||||||||||||||||    
T  35150049 aggttgaacaccttataagtaaga-gacccataaatccattgtc-ttaaggttttgggtaaaagtg 35150112  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 54 - 96
Target Start/End: Original strand, 6071173 - 6071215
Alignment:
Q  54 gaggttgaacactttataactgagatgacccataaattcattg 96  Q
    ||||||||||||||||||| |||||||| ||||||| ||||||    
T  6071173 gaggttgaacactttataagtgagatgatccataaactcattg 6071215  T

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Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 54 - 96
Target Start/End: Original strand, 8481967 - 8482009
Alignment:
Q  54 gaggttgaacactttataactgagatgacccataaattcattg 96  Q
    ||||||||||||||||||| ||||||||| |||||| ||||||    
T  8481967 gaggttgaacactttataaatgagatgactcataaactcattg 8482009  T

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Target: chr3 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 54 - 120
Target Start/End: Complemental strand, 39336346 - 39336281
Alignment:
Q  54 gaggttgaacactttataactgagatgacccataaattcattgtctttaaagttttgggtaaaagtg 120  Q
    ||||||||||||||||||| ||||| || ||||||| |||||| |||||| ||||||| ||| ||||    
T  39336346 gaggttgaacactttataagtgagaggatccataaactcattg-ctttaaggttttggataatagtg 39336281  T

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Target: chr8 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 55 - 120
Target Start/End: Original strand, 34835251 - 34835315
Alignment:
Q  55 aggttgaacactttataactgagatgacccataaattcattgtctttaaagttttgggtaaaagtg 120  Q
    ||||||||||| |||||| | ||| |||||||||| |||||| | |||||||||||||||| ||||    
T  34835251 aggttgaacaccttataagtaagaggacccataaactcattg-ccttaaagttttgggtaagagtg 34835315  T

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