View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3219_high_10 (Length: 454)
Name: NF3219_high_10
Description: NF3219
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3219_high_10 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 272; Significance: 1e-152; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 145 - 444
Target Start/End: Complemental strand, 37070657 - 37070358
Alignment:
| Q |
145 |
tgacgcttatgtgttgacaaacgctactctgccggattcagacgtatttcttccctccatggaaccaattgaggaacaatccatccctgtttgtcttcac |
244 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||| |||||||||||||| |
|
|
| T |
37070657 |
tgacgcttatgtgttgacaaacgcaactctgccggattcagacgtatttcttccctccatggaaccaatcgaggaacaatacatcgctgtttgtcttcac |
37070558 |
T |
|
| Q |
245 |
tttttgctccaccactaccaaagccacaagatttcacttttggtgtcgtggcacttcctccaccgtcatcgccacctgtgcttgtgcagcatctgcctga |
344 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
37070557 |
tttttgctccaccactaccaaagccacaagatttcacttttggtgtcatggcacttcctccaccgtcatcgccacttgtgcttgtgcagcatctgcctga |
37070458 |
T |
|
| Q |
345 |
accatcctgtattttcttgcttctcttgctcacaggtatccaccatcttgagctaaacatagagctttatcgtcaaacacaattttcaacctgtattcat |
444 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37070457 |
accatcctgtgttttcttgcttctcttgctcacaggtatccaccatcttgagctaaacatagagctttatcgtcaaacacaattttcaacctgtattcat |
37070358 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 248; Significance: 1e-137; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 248; E-Value: 1e-137
Query Start/End: Original strand, 36 - 444
Target Start/End: Complemental strand, 38238680 - 38238285
Alignment:
| Q |
36 |
atatcttccatggttgaatcgggccgacaatttaatctgcatatggttcaacatacacgagtaatcagagagttgtgtgaaagatcctcgaactgatgca |
135 |
Q |
| |
|
||||||| ||||| |||||||||||||||||||||||||||||||||| |||||||| ||||||||| ||||| ||||||||||||||| | |||||||| |
|
|
| T |
38238680 |
atatctttcatggctgaatcgggccgacaatttaatctgcatatggttgaacatacatgagtaatcaaagagtcgtgtgaaagatcctcaacctgatgca |
38238581 |
T |
|
| Q |
136 |
agaggagattgacgcttatgtgttgacaaacgctactctgccggattcagacgtatttcttccctccatggaaccaattgaggaacaatccatccctgtt |
235 |
Q |
| |
|
|||||||||||| ||||||||||||| ||||||||||||||| | ||| |||| |||||||||||||||||||||||| ||||||||||||||| ||||| |
|
|
| T |
38238580 |
agaggagattgatgcttatgtgttgataaacgctactctgccagcttctgacgcatttcttccctccatggaaccaatcgaggaacaatccatcactgtt |
38238481 |
T |
|
| Q |
236 |
tgtcttcactttttgctccaccactaccaaagccacaagatttcacttttggtgtcgtggcacttcctccaccgtcatcgccacctgtgcttgtgcagca |
335 |
Q |
| |
|
||||||| ||| ||||||||||||||| ||||||||||||||||||||||||||||| |||| ||||||||| |||||||||| ||||||||||||||| |
|
|
| T |
38238480 |
tgtcttccttttctgctccaccactacctaagccacaagatttcacttttggtgtcgtagcacgtcctccaccatcatcgccacttgtgcttgtgcagca |
38238381 |
T |
|
| Q |
336 |
tctgcctgaaccatcctgtattttcttgcttctcttgctcacaggtatccaccatcttgagctaaacatagagctttatcgtcaaacacaattttcaacc |
435 |
Q |
| |
|
|||||| |||||| |||||| |||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||| |||||| |
|
|
| T |
38238380 |
tctgcccgaacca------------ttgctt-tcttgctcacaggtattcaccatcttgagctaaacatagaggtttatcgtcaaacacaattctcaacc |
38238294 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University