View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3219_high_14 (Length: 405)
Name: NF3219_high_14
Description: NF3219
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3219_high_14 |
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Alignment Details
Target: chr5 (Bit Score: 296; Significance: 1e-166; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 33 - 360
Target Start/End: Original strand, 28201010 - 28201337
Alignment:
| Q |
33 |
ttccatttattcatattaggtccaaattgttaccactcttccctcccaaaatgattctttcaagtccattaagccactcctatctaagatactctgatgt |
132 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
28201010 |
ttccatttattcatattaggtccaaattgttaccactcttccctcccaaaatgattctttcaagtccattaagccactcctatctaagatactccgatgt |
28201109 |
T |
|
| Q |
133 |
ctcattcttttgcttaattattttcacactccaatttctaagtttaggattattttatttgtagctcgtgttccttttcctttgtgagtatctcgtgggt |
232 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||| | |
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| T |
28201110 |
ctcattcttttgcttaattattttcacactccaatttctaagtttaggattattttatttgtagcttgtgttcctttttctttgtgagtatctcgtggct |
28201209 |
T |
|
| Q |
233 |
tttagagttcggctaggaagaagagctcccaaataaaggtaattccccatacttatcataattgttgttaaagagaaatggaactaaaatacgaccttag |
332 |
Q |
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||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||| |
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| T |
28201210 |
tttagagttcggctaggaagaagagctcctaaataaaggtaattccccatacttatcataattgttgttaaagagaaatggaagtaaaatacaaccttac |
28201309 |
T |
|
| Q |
333 |
gtggtaaaatttaaccttttataaaagt |
360 |
Q |
| |
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|||||||||||||||||||||||||||| |
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| T |
28201310 |
gtggtaaaatttaaccttttataaaagt |
28201337 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 95; Significance: 2e-46; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 134 - 264
Target Start/End: Complemental strand, 547758 - 547628
Alignment:
| Q |
134 |
tcattcttttgcttaattattttcacactccaatttctaagtttaggattattttatttgtagctcgtgttccttttcctttgtgagtatctcgtgggtt |
233 |
Q |
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||||||||||||||||||||||||| |||||||| | |||||||||||||||||| ||||||||| ||||||||||||||||||||| | |||||||||| |
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| T |
547758 |
tcattcttttgcttaattattttcatactccaatctttaagtttaggattattttctttgtagcttgtgttccttttcctttgtgagaacctcgtgggtt |
547659 |
T |
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| Q |
234 |
ttagagttcggctaggaagaagagctcccaa |
264 |
Q |
| |
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||||||| |||||||||||||||||||||| |
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| T |
547658 |
ctagagtttggctaggaagaagagctcccaa |
547628 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 288 - 363
Target Start/End: Original strand, 27758890 - 27758965
Alignment:
| Q |
288 |
tcataattgttgttaaagagaaatggaactaaaatacgaccttaggtggtaaaatttaaccttttataaaagtgat |
363 |
Q |
| |
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|||||||||||| ||||||||||| || |||||||| |||||| ||||||||||||||||||||| |||||||| |
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| T |
27758890 |
tcataattgttgataaagagaaataaaattaaaatacaaccttaagtggtaaaatttaaccttttacgaaagtgat |
27758965 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 90; Significance: 2e-43; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 115 - 260
Target Start/End: Original strand, 39882592 - 39882737
Alignment:
| Q |
115 |
tctaagatactctgatgtctcattcttttgcttaattattttcacactccaatttctaagtttaggattattttatttgtagctcgtgttccttttcctt |
214 |
Q |
| |
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|||||| |||||| ||||||| ||||||||||||||||| | || |||||||||||| ||| |||||||||||| ||||||||| ||||||||||||||| |
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| T |
39882592 |
tctaaggtactctaatgtctcgttcttttgcttaattatatacatactccaatttctgagtctaggattattttctttgtagcttgtgttccttttcctt |
39882691 |
T |
|
| Q |
215 |
tgtgagtatctcgtgggttttagagttcggctaggaagaagagctc |
260 |
Q |
| |
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|||||||| |||||| | | |||||||||||||||||||||||||| |
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| T |
39882692 |
tgtgagtacctcgtgagctctagagttcggctaggaagaagagctc |
39882737 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 65; Significance: 2e-28; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 145 - 260
Target Start/End: Complemental strand, 2269968 - 2269853
Alignment:
| Q |
145 |
cttaattattttcacactccaatttctaagttta-ggattattttatttgtagctcgtgttccttttcctttgtgagtatctcgtgggttttagagttcg |
243 |
Q |
| |
|
|||||||||||||| |||||||||||||||| || |||||||||| |||| |||| || ||||||||||| ||||||| |||||||||| ||||||||| |
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| T |
2269968 |
cttaattattttcatactccaatttctaagtctatggattattttctttgaagcttgtcctccttttcctt-gtgagtacctcgtgggttctagagttcg |
2269870 |
T |
|
| Q |
244 |
gctaggaagaagagctc |
260 |
Q |
| |
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||||||||||||||||| |
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|
| T |
2269869 |
gctaggaagaagagctc |
2269853 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 122 - 231
Target Start/End: Complemental strand, 40729880 - 40729773
Alignment:
| Q |
122 |
tactctgatgtctcattcttttgcttaattattttcacactccaatttctaagtttaggattattttatttgtagctcgtgttccttttcctttgtgagt |
221 |
Q |
| |
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|||||| ||||||||||| ||| |||||||||||||| || ||||||||||||| ||| |||||||| |||| |||| ||| ||| ||||||||||||| |
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| T |
40729880 |
tactctaatgtctcattcattt-cttaattattttcataccccaatttctaagtctagcattattttctttgaagcttgtgctcc-gttcctttgtgagt |
40729783 |
T |
|
| Q |
222 |
atctcgtggg |
231 |
Q |
| |
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|||||||||| |
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| T |
40729782 |
atctcgtggg |
40729773 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 47; Significance: 1e-17; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 130 - 224
Target Start/End: Complemental strand, 11036980 - 11036886
Alignment:
| Q |
130 |
tgtctcattcttttgcttaattattttcacactccaatttctaagtttaggattattttatttgtagctcgtgttccttttcctttgtgagtatc |
224 |
Q |
| |
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|||| ||||||||||||||||| |||||| | |||||||||||| | ||| |||||||| |||| |||| ||| |||| |||||||||||||||| |
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| T |
11036980 |
tgtcccattcttttgcttaattgttttcatattccaatttctaattctagcattattttctttgaagcttgtgctcctcttcctttgtgagtatc |
11036886 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 130 - 217
Target Start/End: Complemental strand, 13164002 - 13163915
Alignment:
| Q |
130 |
tgtctcattcttttgcttaattattttcacactccaatttctaagtttaggattattttatttgtagctcgtgttccttttcctttgt |
217 |
Q |
| |
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|||| ||||||||||||||||| |||||| | |||||||||||||| ||| |||||||| |||| |||| ||| |||| ||||||||| |
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| T |
13164002 |
tgtcccattcttttgcttaattgttttcatattccaatttctaagtctagcattattttctttgaagcttgtgctcctcttcctttgt |
13163915 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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