View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3219_high_19 (Length: 368)
Name: NF3219_high_19
Description: NF3219
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3219_high_19 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 355; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 355; E-Value: 0
Query Start/End: Original strand, 10 - 368
Target Start/End: Complemental strand, 51112971 - 51112613
Alignment:
| Q |
10 |
gcagagacatggactgagtgggccaaagagaaaatcaccgaaggccttggcttcaaagacaaagataaggacagcaccaccactgataaagcctctgaat |
109 |
Q |
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| T |
51112971 |
gcagagacatggactgagtgggccaaagagaaaatcaccgaaggccttggcttcaaagacaaagataaggacagcaccaccactgataaagcctctgaat |
51112872 |
T |
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| Q |
110 |
atgcttcagacgctgcacacaaaaccaaacactatgcagatgaaactgcacacaagtccaaggaaactgctcaaaaagccagtgaccatgcccatgatgc |
209 |
Q |
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| T |
51112871 |
atgcttcagacgctgcacacaaaaccaaacactatgcagatgaaactgcacacaagtccaaggaaactgctcaaaaagccagtgaccatgcccatgatgc |
51112772 |
T |
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| Q |
210 |
tgctgagaaaaccaaaggctatgcttgggatgcttctaagaaaatcagagattatgccactgatgcttctgaaaagaccaaacattatgctgctgacgaa |
309 |
Q |
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| T |
51112771 |
tgctgagaaaaccaaaggctatgcttgggatgcttctaagaaaatcagagattatgccactgatgcttctgagaagaccaaacattatgctgctgacgaa |
51112672 |
T |
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| Q |
310 |
agctatgcagatgatgatgatgatgcagaggacaacagagactttgccggtgaagctat |
368 |
Q |
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| T |
51112671 |
agctatgcagatgatgatgatgatgcagaggacaacagagactttgccggtgaagctat |
51112613 |
T |
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