View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3219_high_20 (Length: 363)
Name: NF3219_high_20
Description: NF3219
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3219_high_20 |
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Alignment Details
Target: chr7 (Bit Score: 225; Significance: 1e-124; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 3 - 281
Target Start/End: Original strand, 47957367 - 47957641
Alignment:
| Q |
3 |
atcaagagtggcaatacctataccgggtaacaactaagtcagatatccatccattaaataggtgaaataatgtgtttgtaatgcaacgtgagagggaatg |
102 |
Q |
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| T |
47957367 |
atcaagagtggcaatacttataccgggtaacaactaagtcagatatccatccattaaataggtgaaataatgtgtttgtaatgcaacgtgagagagactg |
47957466 |
T |
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| Q |
103 |
aatctggtttctatatgaaatataaattggcaaattgctatttcttccattagtggtgagagtatgtatgtatgttaagcactactgttaaccagctaat |
202 |
Q |
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| T |
47957467 |
aatctggtttctatatgaaatataaattggcaaattgctatttcttccattagtggtgaga----gtatgtatgttaagcactactgttaaccagctaat |
47957562 |
T |
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| Q |
203 |
gcaacagcgtttaagttatttaaaaagtctcaaactttttcgaccgnnnnnnngagtctctaactttacatgttatgtt |
281 |
Q |
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| T |
47957563 |
gcaacagcgtttaagttatttaaaaagtctcaaactttttcgaccgaaaaaaaaagtctctaactttacatgttatgtt |
47957641 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 264 - 348
Target Start/End: Original strand, 47957659 - 47957742
Alignment:
| Q |
264 |
aactttacatgttatgttacactacactacccagcaacaataatcatcatcgcgtaaaagaaaaaacagcagcaacgacaaagat |
348 |
Q |
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| T |
47957659 |
aactttacatgttatgttacactacactacccagcaacaataatcatcattgcgt-aaagaaaaaacagcagcaacgacaaagat |
47957742 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 52 - 84
Target Start/End: Complemental strand, 31210819 - 31210787
Alignment:
| Q |
52 |
tccattaaataggtgaaataatgtgtttgtaat |
84 |
Q |
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|||||||||||||||| |||||||||||||||| |
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| T |
31210819 |
tccattaaataggtgagataatgtgtttgtaat |
31210787 |
T |
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