View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3219_high_3 (Length: 577)
Name: NF3219_high_3
Description: NF3219
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3219_high_3 |
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Alignment Details
Target: chr8 (Bit Score: 440; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 440; E-Value: 0
Query Start/End: Original strand, 9 - 476
Target Start/End: Complemental strand, 12741888 - 12741421
Alignment:
| Q |
9 |
gagatgaaagcattgaatgttaatggtaccaacccaaaagagaagagaatgaatctagcagaaattctggtgacccacataatcctacatctccacctag |
108 |
Q |
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| T |
12741888 |
gagatgaaagcattgaatgttaatggtaccaacccaaaagagaagagaatgaatctagcagaaattctggtgacccacataatcctacatctccacctag |
12741789 |
T |
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| Q |
109 |
gcataggattttccttatctttccaacgataaagagcaaccttagtagccacataaccaatcgccaaacacaaaccaaatatcaccaatctcaccaaagc |
208 |
Q |
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| T |
12741788 |
gcataggattttccttatctttccaacgataaagagcaaccttagtagccacataaccaatcgccaaacacaaaccaaatatcaccaatctcaccaaagc |
12741689 |
T |
|
| Q |
209 |
taaaggaatacacaaaaacgttttcacccattcataaaacccattaatccctgctttatagttgtggaatgggtccacagttatcgcctctggcacagtc |
308 |
Q |
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| T |
12741688 |
taaaggaatacacaaaaacgttttcacccattcataaaacccattaatccctgctttatagttgtggaatgggtccacagttatcgcctctggcacagtc |
12741589 |
T |
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| Q |
309 |
aactctccaacgttgaatgggttggagatttgacgtgtgtcagaggggacagaggagtcggtgtcggaagaggtggagttgattgttaggattaagtggt |
408 |
Q |
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|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
12741588 |
aactctccaacgttgaatggattggagatttgacgtgtgtcagaggggacagaggagtcggtgtcggaagaggtggagttgattgttaggattaaatggt |
12741489 |
T |
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| Q |
409 |
cagatgggaggagtggggaggtgatagtgttgtccgccatttaagggtggtggggagattttggagaa |
476 |
Q |
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| T |
12741488 |
cggatgtaagaagtggggaggtgatggtgttgtccgccatttaagggtggtggggagattttggagaa |
12741421 |
T |
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