View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3219_high_37 (Length: 271)
Name: NF3219_high_37
Description: NF3219
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3219_high_37 |
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Alignment Details
Target: chr4 (Bit Score: 123; Significance: 3e-63; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 132 - 262
Target Start/End: Original strand, 52580710 - 52580840
Alignment:
| Q |
132 |
aaaaagaaattatagatgacctaccagatttgcgaagcttgattctggtggagagaacagtcaaagttctcctaagcttatgccaccaatccatctatgt |
231 |
Q |
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| T |
52580710 |
aaaaagaaattatagatgacctaccagatttgcgaagcttgattctggtggagagaacagtcaaagttctcctaagcttatgccaccaatccatctgtgt |
52580809 |
T |
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| Q |
232 |
agtgaactggcgcaaacacagagtatgttat |
262 |
Q |
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| T |
52580810 |
agtgaactggcgcaaacacatagtatgttat |
52580840 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 23 - 65
Target Start/End: Original strand, 52580615 - 52580657
Alignment:
| Q |
23 |
gcccctggggaataatagaatggttaaaattagtcaatgattc |
65 |
Q |
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| T |
52580615 |
gcccctggggaataataaaatggttgaaattagtcaatgattc |
52580657 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 87 - 121
Target Start/End: Original strand, 52580679 - 52580713
Alignment:
| Q |
87 |
tgtatgtttgatattaccgaacatgcaagaaaaaa |
121 |
Q |
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| T |
52580679 |
tgtatgtttgatattaccgaacatgcaagaaaaaa |
52580713 |
T |
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