View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3219_high_38 (Length: 263)

Name: NF3219_high_38
Description: NF3219
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3219_high_38
NF3219_high_38
[»] chr4 (7 HSPs)
chr4 (8-167)||(49540794-49540953)
chr4 (171-254)||(40169751-40169834)
chr4 (171-254)||(40168642-40168725)
chr4 (171-223)||(9178638-9178690)
chr4 (168-216)||(55984765-55984813)
chr4 (171-226)||(55986309-55986364)
chr4 (171-224)||(48157680-48157733)
[»] chr6 (6 HSPs)
chr6 (171-254)||(20409070-20409153)
chr6 (166-226)||(16864492-16864552)
chr6 (171-226)||(16859339-16859394)
chr6 (166-226)||(20410217-20410277)
chr6 (171-226)||(6977030-6977085)
chr6 (171-226)||(6978137-6978192)
[»] chr2 (5 HSPs)
chr2 (166-254)||(45412333-45412421)
chr2 (171-226)||(45413477-45413532)
chr2 (170-226)||(28847335-28847391)
chr2 (171-226)||(1389236-1389291)
chr2 (171-226)||(28851672-28851727)
[»] chr8 (3 HSPs)
chr8 (171-254)||(38612222-38612305)
chr8 (171-254)||(38613389-38613472)
chr8 (171-226)||(23039527-23039582)
[»] chr3 (2 HSPs)
chr3 (166-226)||(48053124-48053184)
chr3 (171-226)||(54539112-54539167)
[»] chr7 (2 HSPs)
chr7 (171-226)||(12961987-12962042)
chr7 (164-215)||(3769632-3769683)
[»] chr5 (6 HSPs)
chr5 (171-254)||(17414547-17414630)
chr5 (171-217)||(17415698-17415744)
chr5 (171-224)||(14189667-14189720)
chr5 (171-224)||(14190489-14190542)
chr5 (166-224)||(8061854-8061912)
chr5 (171-216)||(24242020-24242065)
[»] chr1 (2 HSPs)
chr1 (171-226)||(46313274-46313329)
chr1 (171-224)||(50379974-50380027)


Alignment Details
Target: chr4 (Bit Score: 127; Significance: 1e-65; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 8 - 167
Target Start/End: Complemental strand, 49540953 - 49540794
Alignment:
Q  8 atactgatctatcaaataataaatattagtatgttaannnnnnncttaaggatattaatattttttaacttgcttggatatgaactcttgacctaactat 107  Q
    ||||||||||||||||| |||||| ||||||||||||       ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49540953 atactgatctatcaaatgataaatgttagtatgttaatttttttcttaaggatattaatattttttaacttgcttggatatgaactcttgacctaactat 49540854  T
Q  108 cttaattcattagttcaactaagtgagttactcatcctcggagcatgtatatataattaa 167  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  49540853 cttaattcattagttcaactaagtgagttactcatcctcgcagcatgtatatataattaa 49540794  T

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Target: chr4; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 171 - 254
Target Start/End: Complemental strand, 40169834 - 40169751
Alignment:
Q  171 taaactgtaattttgacctcctaactttcacaatggtgcgattttggtcccctattnnnnnnnntgaaaatttaaacccctatg 254  Q
    ||||||| | |||||||| |||||||||||||||||||||||||||| ||||||||        ||||||||||||||||||||    
T  40169834 taaactgcagttttgaccccctaactttcacaatggtgcgattttggccccctattaaaaaaaatgaaaatttaaacccctatg 40169751  T

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Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 171 - 254
Target Start/End: Original strand, 40168642 - 40168725
Alignment:
Q  171 taaactgtaattttgacctcctaactttcacaatggtgcgattttggtcccctattnnnnnnnntgaaaatttaaacccctatg 254  Q
    ||||||| | |||||||| ||||||||| |||||||||||||||||| ||||||||        ||||||||||||||||||||    
T  40168642 taaactgcagttttgaccccctaacttttacaatggtgcgattttggccccctattaaaaaaaatgaaaatttaaacccctatg 40168725  T

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Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 171 - 223
Target Start/End: Original strand, 9178638 - 9178690
Alignment:
Q  171 taaactgtaattttgacctcctaactttcacaatggtgcgattttggtcccct 223  Q
    ||||||| | |||||||||||||||||||| || ||||||||||||| |||||    
T  9178638 taaactgcagttttgacctcctaactttcataaaggtgcgattttggccccct 9178690  T

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Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 168 - 216
Target Start/End: Original strand, 55984765 - 55984813
Alignment:
Q  168 ggttaaactgtaattttgacctcctaactttcacaatggtgcgattttg 216  Q
    |||||||||| | |||| ||| |||||||||||||||||||||||||||    
T  55984765 ggttaaactgcagttttaaccccctaactttcacaatggtgcgattttg 55984813  T

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Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 171 - 226
Target Start/End: Complemental strand, 55986364 - 55986309
Alignment:
Q  171 taaactgtaattttgacctcctaactttcacaatggtgcgattttggtcccctatt 226  Q
    ||||||| | |||| ||| |||||||||||||||||||||||||||  ||||||||    
T  55986364 taaactgcagttttaaccccctaactttcacaatggtgcgattttgaccccctatt 55986309  T

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Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 171 - 224
Target Start/End: Complemental strand, 48157733 - 48157680
Alignment:
Q  171 taaactgtaattttgacctcctaactttcacaatggtgcgattttggtccccta 224  Q
    ||||||| | |||||||| ||||||||||| || ||||||||||||| ||||||    
T  48157733 taaactgcagttttgaccccctaactttcataaaggtgcgattttggcccccta 48157680  T

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Target: chr6 (Bit Score: 44; Significance: 4e-16; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 171 - 254
Target Start/End: Original strand, 20409070 - 20409153
Alignment:
Q  171 taaactgtaattttgacctcctaactttcacaatggtgcgattttggtcccctattnnnnnnnntgaaaatttaaacccctatg 254  Q
    ||||||| | |||||||| |||||||||||||||||||||||||||| ||||||||        ||||||||||||||||||||    
T  20409070 taaactgcagttttgaccccctaactttcacaatggtgcgattttggccccctattaaaaaaaatgaaaatttaaacccctatg 20409153  T

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Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 166 - 226
Target Start/End: Complemental strand, 16864552 - 16864492
Alignment:
Q  166 aaggttaaactgtaattttgacctcctaactttcacaatggtgcgattttggtcccctatt 226  Q
    |||| ||||||| | |||| ||| ||||||||| |||||||||||||||||||||||||||    
T  16864552 aaggctaaactgcagttttaaccccctaacttttacaatggtgcgattttggtcccctatt 16864492  T

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Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 171 - 226
Target Start/End: Original strand, 16859339 - 16859394
Alignment:
Q  171 taaactgtaattttgacctcctaactttcacaatggtgcgattttggtcccctatt 226  Q
    ||||||| |||||| ||| |||||||||||||||||||||||||||  ||||||||    
T  16859339 taaactgcaattttaaccccctaactttcacaatggtgcgattttgaccccctatt 16859394  T

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Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 166 - 226
Target Start/End: Complemental strand, 20410277 - 20410217
Alignment:
Q  166 aaggttaaactgtaattttgacctcctaactttcacaatggtgcgattttggtcccctatt 226  Q
    |||| ||||||| | |||||||| ||||||||| |||||||||||||||||  ||||||||    
T  20410277 aaggctaaactgcagttttgaccccctaacttttacaatggtgcgattttgaccccctatt 20410217  T

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Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 171 - 226
Target Start/End: Original strand, 6977030 - 6977085
Alignment:
Q  171 taaactgtaattttgacctcctaactttcacaatggtgcgattttggtcccctatt 226  Q
    ||||||| | |||| ||| |||||||||||||||||||| ||||||| ||||||||    
T  6977030 taaactgcagttttaaccccctaactttcacaatggtgcaattttggccccctatt 6977085  T

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Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 171 - 226
Target Start/End: Complemental strand, 6978192 - 6978137
Alignment:
Q  171 taaactgtaattttgacctcctaactttcacaatggtgcgattttggtcccctatt 226  Q
    ||||||| | |||| ||| ||||||||||||||||||||||||||||  |||||||    
T  6978192 taaactgcagttttaaccccctaactttcacaatggtgcgattttggctccctatt 6978137  T

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Target: chr2 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 166 - 254
Target Start/End: Original strand, 45412333 - 45412421
Alignment:
Q  166 aaggttaaactgtaattttgacctcctaactttcacaatggtgcgattttggtcccctattnnnnnnnntgaaaatttaaacccctatg 254  Q
    |||| ||||||| | |||||||| |||||||||||||||||||||||||||  ||||||||        ||||||||||||||||||||    
T  45412333 aaggctaaactgcagttttgaccccctaactttcacaatggtgcgattttgaccccctattaaaaaaaatgaaaatttaaacccctatg 45412421  T

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Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 171 - 226
Target Start/End: Complemental strand, 45413532 - 45413477
Alignment:
Q  171 taaactgtaattttgacctcctaactttcacaatggtgcgattttggtcccctatt 226  Q
    ||||||| | |||||||| |||||||||||||||||||||||||||| ||||||||    
T  45413532 taaactgcagttttgaccccctaactttcacaatggtgcgattttggccccctatt 45413477  T

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Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 170 - 226
Target Start/End: Original strand, 28847335 - 28847391
Alignment:
Q  170 ttaaactgtaattttgacctcctaactttcacaatggtgcgattttggtcccctatt 226  Q
    |||||||| | |||||||| ||||| |||||||||| ||| ||||||||||||||||    
T  28847335 ttaaactgcagttttgaccccctaattttcacaatgttgcaattttggtcccctatt 28847391  T

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Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 171 - 226
Target Start/End: Original strand, 1389236 - 1389291
Alignment:
Q  171 taaactgtaattttgacctcctaactttcacaatggtgcgattttggtcccctatt 226  Q
    ||||||| | |||| ||| ||||||||||| |||||||||||||||| ||||||||    
T  1389236 taaactgcagttttaaccccctaactttcagaatggtgcgattttggccccctatt 1389291  T

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Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 171 - 226
Target Start/End: Complemental strand, 28851727 - 28851672
Alignment:
Q  171 taaactgtaattttgacctcctaactttcacaatggtgcgattttggtcccctatt 226  Q
    ||||||| | |||||||| |||||||||||||||| ||||||||||  ||||||||    
T  28851727 taaactgcagttttgaccccctaactttcacaatgttgcgattttgaccccctatt 28851672  T

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Target: chr8 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 171 - 254
Target Start/End: Original strand, 38612222 - 38612305
Alignment:
Q  171 taaactgtaattttgacctcctaactttcacaatggtgcgattttggtcccctattnnnnnnnntgaaaatttaaacccctatg 254  Q
    ||||||| | |||||||| |||||||||||||||| ||||||||||| ||||||||        ||||||||||||||||||||    
T  38612222 taaactgcagttttgaccccctaactttcacaatgttgcgattttggccccctattaaaaaaaatgaaaatttaaacccctatg 38612305  T

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Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 171 - 254
Target Start/End: Complemental strand, 38613472 - 38613389
Alignment:
Q  171 taaactgtaattttgacctcctaactttcacaatggtgcgattttggtcccctattnnnnnnnntgaaaatttaaacccctatg 254  Q
    ||||||| | |||||||| |||||||||||||||| ||||||||||| ||||||||        ||||||||||||||||||||    
T  38613472 taaactgcagttttgaccccctaactttcacaatgttgcgattttggccccctattaaaaaaaatgaaaatttaaacccctatg 38613389  T

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Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 171 - 226
Target Start/End: Complemental strand, 23039582 - 23039527
Alignment:
Q  171 taaactgtaattttgacctcctaactttcacaatggtgcgattttggtcccctatt 226  Q
    ||||||| | |||| ||| | ||||||| |||||||||||||||||||||||||||    
T  23039582 taaactgcagttttaaccccttaactttgacaatggtgcgattttggtcccctatt 23039527  T

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Target: chr3 (Bit Score: 37; Significance: 0.000000000006; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 166 - 226
Target Start/End: Original strand, 48053124 - 48053184
Alignment:
Q  166 aaggttaaactgtaattttgacctcctaactttcacaatggtgcgattttggtcccctatt 226  Q
    |||||||||||| | |||| |||  ||||||||||||||||||||||||||| ||||||||    
T  48053124 aaggttaaactgcagttttaaccctctaactttcacaatggtgcgattttggccccctatt 48053184  T

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Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 171 - 226
Target Start/End: Original strand, 54539112 - 54539167
Alignment:
Q  171 taaactgtaattttgacctcctaactttcacaatggtgcgattttggtcccctatt 226  Q
    ||||||| | |||| ||| ||||||||||||||||||| |||||||| ||||||||    
T  54539112 taaactgcagttttaaccccctaactttcacaatggtgtgattttggccccctatt 54539167  T

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Target: chr7 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 171 - 226
Target Start/End: Original strand, 12961987 - 12962042
Alignment:
Q  171 taaactgtaattttgacctcctaactttcacaatggtgcgattttggtcccctatt 226  Q
    ||||||| | |||| ||| |||||||||||||||||||||||||||| ||||||||    
T  12961987 taaactgcagttttaaccccctaactttcacaatggtgcgattttggccccctatt 12962042  T

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Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 164 - 215
Target Start/End: Complemental strand, 3769683 - 3769632
Alignment:
Q  164 ttaaggttaaactgtaattttgacctcctaactttcacaatggtgcgatttt 215  Q
    |||||| |||||| ||||||||||| ||||| |||||||||| |||||||||    
T  3769683 ttaaggataaactataattttgaccccctaagtttcacaatgttgcgatttt 3769632  T

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Target: chr5 (Bit Score: 36; Significance: 0.00000000002; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 171 - 254
Target Start/End: Original strand, 17414547 - 17414630
Alignment:
Q  171 taaactgtaattttgacctcctaactttcacaatggtgcgattttggtcccctattnnnnnnnntgaaaatttaaacccctatg 254  Q
    ||||||| | ||||||||  |||||||| |||||||||||||||||| ||||||||        ||||||||||||||||||||    
T  17414547 taaactgcagttttgaccctctaacttttacaatggtgcgattttggccccctattaaaaaaaatgaaaatttaaacccctatg 17414630  T

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Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 171 - 217
Target Start/End: Complemental strand, 17415744 - 17415698
Alignment:
Q  171 taaactgtaattttgacctcctaactttcacaatggtgcgattttgg 217  Q
    ||||||| | |||||||| ||||||||||||||||||||||||||||    
T  17415744 taaactgcagttttgaccccctaactttcacaatggtgcgattttgg 17415698  T

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Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 171 - 224
Target Start/End: Original strand, 14189667 - 14189720
Alignment:
Q  171 taaactgtaattttgacctcctaactttcacaatggtgcgattttggtccccta 224  Q
    ||||||| | |||||||| ||||||||||| || ||||||||||||||||||||    
T  14189667 taaactgcagttttgaccccctaactttcataaaggtgcgattttggtccccta 14189720  T

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Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 171 - 224
Target Start/End: Complemental strand, 14190542 - 14190489
Alignment:
Q  171 taaactgtaattttgacctcctaactttcacaatggtgcgattttggtccccta 224  Q
    ||||||| | |||||||| ||||||||||| || ||||||||||||||||||||    
T  14190542 taaactgcagttttgaccccctaactttcataaaggtgcgattttggtccccta 14190489  T

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Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 166 - 224
Target Start/End: Original strand, 8061854 - 8061912
Alignment:
Q  166 aaggttaaactgtaattttgacctcctaactttcacaatggtgcgattttggtccccta 224  Q
    |||| ||||||| | |||| ||| ||||||||||| |||||||||||||||| ||||||    
T  8061854 aaggctaaactgcagttttaaccccctaactttcagaatggtgcgattttggcccccta 8061912  T

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Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 171 - 216
Target Start/End: Original strand, 24242020 - 24242065
Alignment:
Q  171 taaactgtaattttgacctcctaactttcacaatggtgcgattttg 216  Q
    ||||||| | |||||||| |||||||||||||| ||||||||||||    
T  24242020 taaactgcagttttgaccccctaactttcacaaaggtgcgattttg 24242065  T

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Target: chr1 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 171 - 226
Target Start/End: Complemental strand, 46313329 - 46313274
Alignment:
Q  171 taaactgtaattttgacctcctaactttcacaatggtgcgattttggtcccctatt 226  Q
    ||||||| | |||||||| |||||||||||||| ||||||||||||| ||||||||    
T  46313329 taaactgcagttttgaccccctaactttcacaaaggtgcgattttggccccctatt 46313274  T

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Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 171 - 224
Target Start/End: Complemental strand, 50380027 - 50379974
Alignment:
Q  171 taaactgtaattttgacctcctaactttcacaatggtgcgattttggtccccta 224  Q
    ||||||| | |||||||| ||||||||||| || ||||||||||||||||||||    
T  50380027 taaactgcagttttgaccccctaactttcataaaggtgcgattttggtccccta 50379974  T

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