View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3219_high_42 (Length: 249)
Name: NF3219_high_42
Description: NF3219
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3219_high_42 |
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Alignment Details
Target: chr3 (Bit Score: 130; Significance: 2e-67; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 102 - 235
Target Start/End: Complemental strand, 33096345 - 33096212
Alignment:
| Q |
102 |
aaaaagtgggtttgtaaatcgatatatgcaaacattacaaacacaattccatcaccgtattcattttaaattaaaattcattcgatgcgtatactatctc |
201 |
Q |
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| T |
33096345 |
aaaaagtgggtttgtaaatcgatatatgcaaacattacaaacacaattccatcaccgtattcattttaaattaaaattcattcgatgcgtatactatgtc |
33096246 |
T |
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| Q |
202 |
ccgagccacagaaaaatatgcaaatcaaaatggt |
235 |
Q |
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| T |
33096245 |
ccgagccacagaaaaatatgcaaatcaaaatggt |
33096212 |
T |
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Target: chr3; HSP #2
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 1 - 102
Target Start/End: Complemental strand, 33096499 - 33096398
Alignment:
| Q |
1 |
ttcaacttttcatctgatatgttccacaagttctgttatagaatgaaaaatgtcttggactcttggtcattctataagaaattaagcattgaaccacata |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33096499 |
ttcaacttttcatctgatatgttccacaagttctgttatagaatgaaaaatgtcttggactcttggtcattctataagaaattaagcattgaaccacata |
33096400 |
T |
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| Q |
101 |
ta |
102 |
Q |
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|| |
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| T |
33096399 |
ta |
33096398 |
T |
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