View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3219_high_49 (Length: 238)
Name: NF3219_high_49
Description: NF3219
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3219_high_49 |
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Alignment Details
Target: chr5 (Bit Score: 199; Significance: 1e-108; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 602186 - 602410
Alignment:
| Q |
1 |
aggttgcagatcacaaatcttagaagatgaaaacaaaacatgatccaatgattataaaacattcactcacgaaggaaatttttgctcttttcagcttttc |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
602186 |
aggttgcagatcacaaatcttagaagatgaaaacaaaacatgatccaattattataaaacattcactcacgaaggaaatttttgctcttttcagcttttc |
602285 |
T |
|
| Q |
101 |
catctgatatagtggcatgagataaggaccaatttatccctttcgatcgttaaatgtcaagcaaacaagcattaaaaatgtgcaac---tctgtataatg |
197 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||| |
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|
| T |
602286 |
catctgatatagtggcatgagataaggaccaatttatccctttcgatcgttaaatgtcaagcaaacaagcattaaaaatgtgcagctgatctgtataatt |
602385 |
T |
|
| Q |
198 |
aaatttgcccagatgatacaagttg |
222 |
Q |
| |
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||||||||||||||||||||||||| |
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|
| T |
602386 |
aaatttgcccagatgatacaagttg |
602410 |
T |
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