View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3219_high_5 (Length: 561)
Name: NF3219_high_5
Description: NF3219
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3219_high_5 |
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Alignment Details
Target: chr1 (Bit Score: 328; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 328; E-Value: 0
Query Start/End: Original strand, 20 - 430
Target Start/End: Complemental strand, 3825595 - 3825192
Alignment:
| Q |
20 |
actaggtggtgtgcccttggccgggagccattataccaaaattaggacataagatgtgataccaaaattgcatctataggctacggaatgttattttgga |
119 |
Q |
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| T |
3825595 |
actaggtggtgtgcccttggccgg-agccattataccaaaattaggacataagatgtgataccaaaattgcatctataggctacggaatgttattttgga |
3825497 |
T |
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| Q |
120 |
ataaatctgacccgtctttaattaaaatcacatcaattttatatgggaccaatagctaaaagtcatcaagtttaaccaagctagtgctttgccgtttttc |
219 |
Q |
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|||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3825496 |
ataaatctgatccgtctttaattaaaatcacatcaatttcatatgggaccaatagctaaaagtcatcaagtttaaccaagctagtgctttgccgtttttc |
3825397 |
T |
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| Q |
220 |
ttgttggtgtttgcattgtattccagcttgtaaagactttagagccataaccctaaccttgcactctttatgtaggtagatatctcgatttgatttaata |
319 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||| |
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| T |
3825396 |
ttgttggtgtttgcattgtattccagcttgtaaagactttagagccataaccctaaccttgcactctttgtgtaggtagagatctcgatttgatttaata |
3825297 |
T |
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| Q |
320 |
tatttcattttcctttttnnnnnnnnnnnnnngaatatatcaattgaaaacaacgtacacctttaaatatagtttttcagagaacctttaaaaatgctta |
419 |
Q |
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|||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
3825296 |
tatttcattttccttttt------aaaaaaaagaatatatcaattgaaaactacgtacacctttaaatatagtttttcagagaacctttaaaaatagtta |
3825203 |
T |
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| Q |
420 |
taggttcatat |
430 |
Q |
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| T |
3825202 |
taggttcatat |
3825192 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 113; E-Value: 6e-57
Query Start/End: Original strand, 439 - 551
Target Start/End: Complemental strand, 3825213 - 3825101
Alignment:
| Q |
439 |
aaaaatagttataggttcatatttaaagcgtggttttatcttgcaatttgtcaacagtcacgttcatcatagcataatcaactatagtttctcctcacct |
538 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3825213 |
aaaaatagttataggttcatatttaaagcgtggttttatcttgcaatttgtcaacagtcacgttcatcatagcataatcaactatagtttctcctcacct |
3825114 |
T |
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| Q |
539 |
attatatcctatg |
551 |
Q |
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||||||||||||| |
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| T |
3825113 |
attatatcctatg |
3825101 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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