View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3219_high_50 (Length: 238)
Name: NF3219_high_50
Description: NF3219
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3219_high_50 |
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Alignment Details
Target: chr7 (Bit Score: 199; Significance: 1e-108; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 4 - 218
Target Start/End: Original strand, 24213067 - 24213281
Alignment:
| Q |
4 |
gttgataagtgtaggaagctttatgctttatagtgtgctgcttaatgtaggaattctttaaacttgactttgggaccaaatacttgaattctgtaaaatt |
103 |
Q |
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| T |
24213067 |
gttgataagtgtaggaagttttatgctttatagtgtgctgcttaatgtaggaattctttaaacttgactttgggaccaaatacttgaattctgtaaaatt |
24213166 |
T |
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| Q |
104 |
aaaatgacatgttgattgttgaagaaggatcacatgaagaaaattaaaagttaaacagcatcaagttataaatgaatagccaagtaataagaaaaaatat |
203 |
Q |
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| T |
24213167 |
aaaatgacacgttgattgttgaagaaggatcacatgaagaaaattaaaagttaaacagcatcaagttataaatgaatagccaagtaataagaaaaaaaat |
24213266 |
T |
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| Q |
204 |
ttaaattttcaagtt |
218 |
Q |
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|||||||||||||| |
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| T |
24213267 |
ataaattttcaagtt |
24213281 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 170; Significance: 2e-91; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 7338189 - 7337969
Alignment:
| Q |
1 |
cttgttgataagtgtaggaagctttatgctttatagtgtgctgcttaatgtaggaattctttaaacttgactttgggaccaaatacttgaattctgtaaa |
100 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||| |
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| T |
7338189 |
cttgctgataagtgtaggaagctttatgctttatagtgtgctgcttaatgtaggaactctttaaacttgactttgggaccaaatacttgaattttgtaaa |
7338090 |
T |
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| Q |
101 |
attaaaatgacatgttgattgttgaagaaggatcacatgaagaaaattaaaagttaaacagcatcaagttataaatgaatagccaagtaataagaaaaaa |
200 |
Q |
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||||||||||||||||||||||||| ||||||||||||||| |||||| ||| |||||| ||||||||||||||||||||||||||||| |||||||||| |
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| T |
7338089 |
attaaaatgacatgttgattgttgatgaaggatcacatgaaaaaaatttaaatttaaaccgcatcaagttataaatgaatagccaagta-taagaaaaaa |
7337991 |
T |
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| Q |
201 |
-tatttaaattttcaagttcaa |
221 |
Q |
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||| ||||||||||||||||| |
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| T |
7337990 |
atatataaattttcaagttcaa |
7337969 |
T |
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